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BaseInfo

ncRNA ID	novel_zma_miR3126
Species	Zea mays
Class	miRNA
Genome position	Chr1:78297624-78297702 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	23
Mature sequence(if miRNA)	1 - GAGGGGAUUAGAGGGGCUAAAAU - 23
Stem-loop(if miRNA)	---         A AG                      GA    GAGGGGAUU G  GGGCUAAAAUCCAUUUCUUAUU  A    ||||||||| |  ||||||||||||||||||||||  A    CUUCCCUAA C  CCCGAUUUUAGGUGGAGAAUAA  U GAC         - CU                      GU
Stem-loop sequence	GAGGGGAUUAGAGGGGCUAAAAUCCAUUUCUUAUUGAAAUUGAAUAAGAGGUGGAUUUUAGCCCUCCAAUCCCUUCCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405820.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||||||||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	0.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||||||||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	0.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
JB166281.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||||||||||||||||||| targets:198   AUUUUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	0.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   |||||||||||||*||||||||| targets:3496   AUUUUAGCCCCUCCAAUCCCCUC   3518 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   |||||||||||||*||||||||| targets:3531   AUUUUAGCCCCUCCAAUCCCCUC   3553 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||*||||||*||||||||| targets:680   AUUUUAUCCCCUCCAAUCCCCUC   702 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||*||||||*||||||||| targets:1560   AUUUUAUCCCCUCCAAUCCCCUC   1582 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||*||||||*||||||||| targets:1580   AUUUUAUCCCCUCCAAUCCCCUC   1602 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||*||||||*||||||||| targets:1604   AUUUUAUCCCCUCCAAUCCCCUC   1626 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ||||||*||||||*||||||||| targets:1637   AUUUUAUCCCCUCCAAUCCCCUC   1659 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   ***||||||||||*||||||||| targets:328   UGCUUAGCCCCUCCAAUCCCCUC   350 Target Full Sequence	1.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   |*||||*||||||*||||||||| targets:1027   ACUUUAACCCCUCCAAUCCCCUC   1049 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
NM_001147806.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   |*|||||||*|||||||*||||| targets:1049   AGUUUAGCCGCUCUAAUACCCUC   1071 Target Full Sequence	2.5	Zea mays putative RING zinc finger domain superfamily protein (LOC100273367), mRNA	NA	coding protein	psRNATarget
BT040940.1	ncRNA:23   UAAAAUCGGGGAGAUUAGGGGAG   1   |*|||||||*|||||||*||||| targets:1049   AGUUUAGCCGCUCUAAUACCCUC   1071 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0154E21 mRNA, complete cds	NA	coding protein	psRNATarget