Search result

BaseInfo

ncRNA ID	novel_zma_miR3119
Species	Zea mays
Class	miRNA
Genome position	Chr1:30841535-30841643 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	21
Mature sequence(if miRNA)	1 - UUAAUAAAUUUGUCUCGUCGU - 21
Stem-loop(if miRNA)	--  UA   UG                             UA UC    --       GG  AGA  AGUUUAUUAAGUCUAAUUAGUCUAUGAUU  C  AUGU  GAUGC   ||  |||  |||||||||||||||||||||||||||||  |  ||||  ||||U   CU  UCU  UUAAAUAAUUCGGAUUAAUUAGGUACUAA  G  UACA  UUACA UG  GC   GU                             UC UU    AA
Stem-loop sequence	GGUAAGAUGAGUUUAUUAAGUCUAAUUAGUCUAUGAUUUACUCAUGUGAUGCUACAUUAAACAUUUGCUAAUCAUGGAUUAAUUAGGCUUAAUAAAUUUGUCUCGUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020537836.1	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   |=|||*||||||||||||||| targets:368   AUGACAAGACAAAUUUAUUAA   388 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103625804 (LOC103625804), mRNA	NA	coding protein	psRNATarget
XM_008651901.2	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   ||||=|||||||*|||||||| targets:1232   ACGAUGAGACAAUUUUAUUAA   1252 Target Full Sequence	2.5	PREDICTED: Zea mays vacuolar protein 8 (LOC103630849), mRNA	NA	coding protein	psRNATarget
XM_008679026.2	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   |=|=|||||*||||||||||| targets:1778   AUGGCGAGAAAAAUUUAUUAA   1798 Target Full Sequence	2.5	PREDICTED: Zea mays disulfide oxidoreductase/ electron carrier/ oxidoreductase (LOC100282462), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068585.1	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   |**||*||||||||||||||| targets:828   AAUACUAGACAAAUUUAUUAA   848 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0336C10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553409.1	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   |**||*||||||||||||||| targets:1233   AAUACUAGACAAAUUUAUUAA   1253 Target Full Sequence	2.0	PREDICTED: Zea mays nitrate-induced NOI protein (LOC100285658), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553410.1	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   |**||*||||||||||||||| targets:1151   AAUACUAGACAAAUUUAUUAA   1171 Target Full Sequence	2.0	PREDICTED: Zea mays nitrate-induced NOI protein (LOC100285658), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553411.1	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   |**||*||||||||||||||| targets:1153   AAUACUAGACAAAUUUAUUAA   1173 Target Full Sequence	2.0	PREDICTED: Zea mays nitrate-induced NOI protein (LOC100285658), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT088020.1	ncRNA:21   UGCUGCUCUGUUUAAAUAAUU   1   |**||*||||||||||||||| targets:1768   AAUACUAGACAAAUUUAUUAA   1788 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0358M05 mRNA, complete cds	NA	coding protein	psRNATarget