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BaseInfo

ncRNA ID	novel_zma_miR3118
Species	Zea mays
Class	miRNA
Genome position	Chr1:34332446-34332596 [-]
Reference genome	RefGen_v4
Source	SRR2089714;SRR5099742;SRR5451005;SRR5451006;SRR2089707
Length	22
Mature sequence(if miRNA)	130 - CUAAGGGUUUGUUCGGUUAUUU - 151
Stem-loop(if miRNA)	--   --            G  AU    G  ---             -A    A UG -  AAAAAAAUAUGAAGGAUUUU   CUA  AGGGUUUGUUCG UU  UUCU UC   UCAUGUGGAUUGG  UAAG U  G AA                    G   |||  |||||||||||| ||  |||| ||   |||||||||||||  |||| |  | ||                    A   GAU  UCCCGAACAAGC AA  AGGA AG   AGUACACCUAAUC  CCCU A  A UU                    C GG   AA            G  --    G  UUA             CA    - -- C  ACUCAAAUUUAGGGCUUGUU
Stem-loop sequence	CUAAGGGUUUGUUCGGUUAUUUCUGUCUCAUGUGGAUUGGAUAAGAUUGGAAAAAAAAAUAUGAAGGAUUUUGACUUGUUCGGGAUUUAAACUCAUUCAAUCCCACCUAAUCCACAUGAAUUGAGAGGAAAGCGAACAAGCCCUAAUAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539455.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:308   GAAUAACCGAACAAGCCCUUAG   329 Target Full Sequence	1.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645434.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:2563   GAAUAACCGAACAAGCCCUUAG   2584 Target Full Sequence	1.5	PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087335.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =||||||=|||||||||||||| targets:695   GAAUAACUGAACAAACCCUUAG   716 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0043P09 mRNA, complete cds	NA	coding protein	psRNATarget
EU964623.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:1544   GAAUAACCGAACAAGCCCUUAG   1565 Target Full Sequence	1.5	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174684.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:1320   GAAUAACCGAACAAGCCCUUAG   1341 Target Full Sequence	1.5	Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA	NA	coding protein	psRNATarget
BT062563.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:1320   GAAUAACCGAACAAGCCCUUAG   1341 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds	NA	coding protein	psRNATarget
JB170105.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:126   GAAUAACCGAACAAGCCCUUAG   147 Target Full Sequence	1.5	Sequence 7769 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241774.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:126   GAAUAACCGAACAAGCCCUUAG   147 Target Full Sequence	1.5	Sequence 7769 from Patent EP2985353	NA	coding protein	psRNATarget
HI409644.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||| targets:126   GAAUAACCGAACAAGCCCUUAG   147 Target Full Sequence	1.5	Sequence 7769 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   ||||||||||||||=||||||* targets:3148   AAAUAACCGAACAAGCCCUUAA   3169 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   ||||||||||||||=||||||* targets:1004   AAAUAACCGAACAAGCCCUUAA   1025 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668946.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   *|||||||||||||=||||||| targets:2390   CAAUAACCGAACAAGCCCUUAG   2411 Target Full Sequence	1.5	PREDICTED: Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001138477.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   *|||||||||||||=||||||| targets:1278   CAAUAACCGAACAAGCCCUUAG   1299 Target Full Sequence	1.5	Zea mays Transmembrane 9 superfamily member 9 (LOC100193342), mRNA	NA	coding protein	psRNATarget
BT035580.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   *|||||||||||||=||||||| targets:1278   CAAUAACCGAACAAGCCCUUAG   1299 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0070I12 mRNA, complete cds	NA	coding protein	psRNATarget
EU972046.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   ||||||||||||||=||||||* targets:812   AAAUAACCGAACAAGCCCUUAA   833 Target Full Sequence	2.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU941886.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   *|||||||||||||=||||||| targets:180   CAAUAACCGAACAAGCCCUUAG   201 Target Full Sequence	1.5	Zea mays clone 1471521 mRNA sequence	NA	coding protein	psRNATarget
EZ113075.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =||||||=||||||=||||||| targets:14   GAAUAACUGAACAAGCCCUUAG   35 Target Full Sequence	2.5	TSA: Zea mays contig48736, mRNA sequence	NA	coding protein	psRNATarget
XM_008676887.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:2672   GAAUAACCGAACAAGCCCUUAC   2693 Target Full Sequence	2.5	PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:2889   GAAUAACCGAACAAGCCCUUAA   2910 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:2880   GAAUAACCGAACAAGCCCUUAA   2901 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674543.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:2528   GAAUAACCGAACAAGCCCUUAA   2549 Target Full Sequence	2.5	PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539702.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:2583   GAAUAACCGAACAAGCCCUUAU   2604 Target Full Sequence	2.5	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA	NA	coding protein	psRNATarget
NM_001175812.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:1550   GAAUAACCGAACAAGCCCUUAA   1571 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA	NA	coding protein	psRNATarget
BT066364.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:1550   GAAUAACCGAACAAGCCCUUAA   1571 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds	NA	coding protein	psRNATarget
BT018247.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||||||||=||||||* targets:489   GAAUAACCGAACAAGCCCUUAA   510 Target Full Sequence	2.5	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =||||||||||||||*|||||| targets:1347   GAAUAACCGAACAAAACCUUAG   1368 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =||||||||||||||*|||||| targets:1491   GAAUAACCGAACAAAACCUUAG   1512 Target Full Sequence	1.5	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =||||||||||||||*|||||| targets:1491   GAAUAACCGAACAAAACCUUAG   1512 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   |*||||||||||||=||||||| targets:1998   AUAUAACCGAACAAGCCCUUAG   2019 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538542.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|||||||*|||||=||||||| targets:89   GAAUAACCAAACAAGCCCUUAG   110 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103628650 (LOC103628650), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   ***|||||||||||=||||||| targets:3611   CCCUAACCGAACAAGCCCUUAG   3632 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   ***|||||||||||=||||||| targets:3611   CCCUAACCGAACAAGCCCUUAG   3632 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671184.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =|*||||=||||||=||||||| targets:1112   GAUUAACUGAACAAGCCCUUAG   1133 Target Full Sequence	2.5	PREDICTED: Zea mays thioredoxin M3, chloroplastic (LOC103646448), mRNA	NA	coding protein	psRNATarget
BT085393.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   ***|||=||||||||||||||| targets:1693   CCUUAAUCGAACAAACCCUUAG   1714 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0006K23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542681.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =*|*||||||||||=||||||| targets:1000   GUACAACCGAACAAGCCCUUAG   1021 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542682.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =*|*||||||||||=||||||| targets:905   GUACAACCGAACAAGCCCUUAG   926 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT069589.2	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   *|*|||||||||||=||||||* targets:1048   UACUAACCGAACAAGCCCUUAU   1069 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138309.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =*=||||||||||*|||||||| targets:1134   GUGUAACCGAACAUACCCUUAG   1155 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193152 (LOC100193152), mRNA	NA	coding protein	psRNATarget
BT035338.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =*=||||||||||*|||||||| targets:1134   GUGUAACCGAACAUACCCUUAG   1155 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0056C20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672078.2	ncRNA:21   UUAUUGGCUUGUUUGGGAAUC   1   *=|||||*||||||||||||| targets:1   UGUAACCAAACAAACCCUUAG   21 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103647559 (LOC103647559), mRNA	NA	coding protein	psRNATarget
EZ093244.1	ncRNA:22   UUUAUUGGCUUGUUUGGGAAUC   1   =*=||||||||||*|||||||| targets:92   GUGUAACCGAACACACCCUUAG   113 Target Full Sequence	1.5	TSA: Zea mays contig28894, mRNA sequence	NA	coding protein	psRNATarget