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BaseInfo

ncRNA ID novel_zma_miR3114
Species Zea mays
Class miRNA
Genome position Chr7:125188893-125188959 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 21
Mature sequence(if miRNA) 47 - ACGACCUAUGGCGCCGAGCAA - 67
Stem-loop(if miRNA) --               C               
  GCUCGGCGCCAUAGG UGUGGCGCCGAGCUGU
  ||||||||||||||| |||||||||||||||G
  CGAGCCGCGGUAUCC GCACCGCGGCUCGAUU
AA               A               
Stem-loop sequence GCUCGGCGCCAUAGGCUGUGGCGCCGAGCUGUGUUAGCUCGGCGCCACGACCUAUGGCGCCGAGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551169.1
ncRNA:21   AACGAGCCGCGGUAUCCAGCA   1
  |||||||||||||||||*|||
targets:1903   UUGCUCGGCGCCAUAGGCCGU   1923

1.5 PREDICTED: Zea mays subtilisin-like protease SBT3.10 (LOC103652446), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020551168.1
ncRNA:21   AACGAGCCGCGGUAUCCAGCA   1
  |||||||||||||||||*|||
targets:1912   UUGCUCGGCGCCAUAGGCCGU   1932

1.5 PREDICTED: Zea mays subtilisin-like protease SBT3.10 (LOC103652446), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001149478.1
ncRNA:21   AACGAGCCGCGGUAUCCAGCA   1
  **||*||||||||*|||||||
targets:695   GCGCGCGGCGCCAGAGGUCGU   715

2.5 Zea mays uncharacterized LOC100275398 (LOC100275398), mRNA NA coding protein psRNATarget
EU955671.1
ncRNA:21   AACGAGCCGCGGUAUCCAGCA   1
  **||*||||||||*|||||||
targets:695   GCGCGCGGCGCCAGAGGUCGU   715

2.5 Zea mays clone 1542028 hypothetical protein mRNA, complete cds NA coding protein psRNATarget