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BaseInfo

ncRNA ID	novel_zma_miR3113
Species	Zea mays
Class	miRNA
Genome position	Chr1:50779626-50779699 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2089706
Length	21
Mature sequence(if miRNA)	54 - UGUGUUUGGCAAUUUAGGGAC - 74
Stem-loop(if miRNA)	--          G      AAG    A   U    AU   CCCUAAAUUG CAAACA   GAAU AAA AGAG  A   |||||||||| ||||||   |||| ||| ||||  A   GGGAUUUAAC GUUUGU   CUUG UUU UCUC  U CA          G      GUA    A   -    CC
Stem-loop sequence	CCCUAAAUUGGCAAACAAAGGAAUAAAAUAGAGAUAAUCCCUCUUUUAGUUCAUGUGUUUGGCAAUUUAGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008683103.2	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   |||||||=|||||||||=||| targets:2909   GUCCCUAGAUUGCCAAAUACA   2929 Target Full Sequence	2.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   |||||||=|||||||||=||| targets:910   GUCCCUAGAUUGCCAAAUACA   930 Target Full Sequence	2.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   |||||||=|||||||||=||| targets:910   GUCCCUAGAUUGCCAAAUACA   930 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542366.1	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   *|=|||||||||=|||||||| targets:4312   CUUCCUAAAUUGUCAAACACA   4332 Target Full Sequence	2.5	PREDICTED: Zea mays helicase-like transcription factor CHR28 (LOC103636595), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658953.2	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   *|=|||||||||=|||||||| targets:4179   CUUCCUAAAUUGUCAAACACA   4199 Target Full Sequence	2.5	PREDICTED: Zea mays helicase-like transcription factor CHR28 (LOC103636595), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542368.1	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   *|=|||||||||=|||||||| targets:3923   CUUCCUAAAUUGUCAAACACA   3943 Target Full Sequence	2.5	PREDICTED: Zea mays helicase-like transcription factor CHR28 (LOC103636595), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY106862.1	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   |||||||||||*||||||||= targets:389   GUCCCUAAAUUACCAAACACG   409 Target Full Sequence	2.5	Zea mays PCO139775 mRNA sequence	NA	coding protein	psRNATarget
EZ091785.1	ncRNA:21   CAGGGAUUUAACGGUUUGUGU   1   |*|||||||||||=||||||| targets:104   GCCCCUAAAUUGCUAAACACA   124 Target Full Sequence	1.5	TSA: Zea mays contig27434, mRNA sequence	NA	coding protein	psRNATarget