ncRNA ID | osa-miR5156 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr8:16955761-16956103 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 24 |
Mature sequence(if miRNA) | 308 - AGCCUGUAAAACUGCAAAAAGGAA - 331 |
Stem-loop(if miRNA) |
UC                                 A    A               - UAG    AC GGGA      UG -  AAGAAAAAUUUG -      -  C    --   CCCGUGUCGAUGUGUAUCAGACGCGGGACGACGCGCAUCGGACACUGCUAGCGCGAGUCC   GUGAGGCAAAAGCCUGUAAAACUGCAAAAAGGA CAUU UCUCUCCUCUCUCCC C   UGUU  C    CUCCCG  U CU            C CGCGUC GA ACGC  AUC                                                            A   ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |   ||||  |    ||||||  | ||            | |||||| || ||||  |||                                                            A   CACUCCGUUUUCGGACGUUUUGACGUUUUUCCU GUAA AGAGAGGAGAGAGGG G   ACGA  G    GAGGGU  A GA            G UGUGUG UG CCUG  GAC                                                            G CA                                 -    G               A UGG    GA -AGA      GU C  ------AAUAGG A      A  U    AC   GAUCUCGAAAUAAUGAAGUGGAACGUCGUGUCGUCGUCGCUAACGUUGAGAGGAAAACCU |
Stem-loop sequence | UCGUGAGGCAAAAGCCUGUAAAACUGCAAAAAGGAACAUUAUCUCUCCUCUCUCCCCUAGUGUUACCGGGACUCCCGUGUCUAAGAAAAAUUUGCCGCGUCGACACGCAUCCCCGUGUCGAUGUGUAUCAGACGCGGGACGACGCGCAUCGGACACUGCUAGCGCGAGUCCAAGUCCAAAAGGAGAGUUGCAAUCGCUGCUGCUGUGCUGCAAGGUGAAGUAAUAAAGCUCUAGCAGCAGUCCUGUAGUGUGUAGGGAUAAAGCAUGUGGGAGAGAGAGAGCAGGUGAGGGAGAGAGGAGAGAGAAUGUCCUUUUUGCAGUUUUGCAGGCUUUUGCCUCACAC |
1 | PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011). |