Search result

BaseInfo

ncRNA ID osa-miR5156
Species Oryza sativa
Class miRNA
Genome position Chr8:16955761-16956103 [-]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 308 - AGCCUGUAAAACUGCAAAAAGGAA - 331
Stem-loop(if miRNA) UC                                 A    A               - UAG    AC GGGA      UG -  AAGAAAAAUUUG -      -  C    --   CCCGUGUCGAUGUGUAUCAGACGCGGGACGACGCGCAUCGGACACUGCUAGCGCGAGUCC
  GUGAGGCAAAAGCCUGUAAAACUGCAAAAAGGA CAUU UCUCUCCUCUCUCCC C   UGUU  C    CUCCCG  U CU            C CGCGUC GA ACGC  AUC                                                            A
  ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |   ||||  |    ||||||  | ||            | |||||| || ||||  |||                                                            A
  CACUCCGUUUUCGGACGUUUUGACGUUUUUCCU GUAA AGAGAGGAGAGAGGG G   ACGA  G    GAGGGU  A GA            G UGUGUG UG CCUG  GAC                                                            G
CA                                 -    G               A UGG    GA -AGA      GU C  ------AAUAGG A      A  U    AC   GAUCUCGAAAUAAUGAAGUGGAACGUCGUGUCGUCGUCGCUAACGUUGAGAGGAAAACCU
Stem-loop sequence UCGUGAGGCAAAAGCCUGUAAAACUGCAAAAAGGAACAUUAUCUCUCCUCUCUCCCCUAGUGUUACCGGGACUCCCGUGUCUAAGAAAAAUUUGCCGCGUCGACACGCAUCCCCGUGUCGAUGUGUAUCAGACGCGGGACGACGCGCAUCGGACACUGCUAGCGCGAGUCCAAGUCCAAAAGGAGAGUUGCAAUCGCUGCUGCUGUGCUGCAAGGUGAAGUAAUAAAGCUCUAGCAGCAGUCCUGUAGUGUGUAGGGAUAAAGCAUGUGGGAGAGAGAGAGCAGGUGAGGGAGAGAGGAGAGAGAAUGUCCUUUUUGCAGUUUUGCAGGCUUUUGCCUCACAC

Reference

1 PMID:21525786
"Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus";
Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D;
RNA Biol. 8:538-547(2011).