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BaseInfo

ncRNA ID	novel_zma_miR3108
Species	Zea mays
Class	miRNA
Genome position	Chr1:163239132-163239213 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - UUUUGACUAGGAGGAGAUUUAAUC - 24
Stem-loop(if miRNA)	--       C           UUUU   C       A  UU   UUAAAUC CCUUCUAGUUA    UGA UAGGAGG GG  U   ||||||| |||||||||||    ||| ||||||| ||  A   AAUUUAG GGAGGAUCAGU    AUU AUCUUCC CC  A CU       A           UUUU   A       -  UA
Stem-loop sequence	UUAAAUCCCCUUCUAGUUAUUUUUGACUAGGAGGAGGUUUAAAUCCCCUUCUAAUUAUUUUUGACUAGGAGGAGAUUUAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY109329.1	ncRNA:24   CUAAUUUAGAGGAGGAUCAGUUUU   1   |||||||||||=|||||||||||| targets:391   GAUUAAAUCUCUUCCUAGUCAAAA   414 Target Full Sequence	1.5	Zea mays CL1979_1 mRNA sequence	NA	coding protein	psRNATarget
S78780.1	ncRNA:24   CUAAUUUAGAGGAGGAUCAGUUUU   1   |||||||||||=|||||||||||| targets:391   GAUUAAAUCUCUUCCUAGUCAAAA   414 Target Full Sequence	1.5	(gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt]	NA	coding protein	psRNATarget
BT069231.2	ncRNA:24   CUAAUUUAGAGGAGGAUCAGUUUU   1   |||||||||||=|||||||||||| targets:1013   GAUUAAAUCUCUUCCUAGUCAAAA   1036 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670947.1	ncRNA:24   CUAAUUUAGAGGAGGAUCAGUUUU   1   |||||||||*|=|||||||||||| targets:608   GAUUAAAUCCCUUCCUAGUCAAAA   631 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103646219 (LOC103646219), mRNA	NA	coding protein	psRNATarget