Search result

BaseInfo

ncRNA ID novel_zma_miR3107
Species Zea mays
Class miRNA
Genome position Chr1:164609900-164609963 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR2287159;SRR2287164;SRR2287165;SRR5451004;SRR5451005;SRR2089700;SRR2089705
Length 24
Mature sequence(if miRNA) 41 - CGGUGAACCACCGGACAUCGCACA - 64
Stem-loop(if miRNA) --     AAC      A   -     AG    AG
  CGGUG   CACCGG CAU CGCAC  GAGA  G
  |||||   |||||| ||| |||||  ||||
  GCCAC   GUGGCC GUG GCGUG  UUCU  G
AG     ---      G   U     CG    AG
Stem-loop sequence CGGUGAACCACCGGACAUCGCACAGGAGAAGGGGAUCUUGCGUGCGUGUGGCCGGUGCACCGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409994.1
ncRNA:24   ACACGCUACAGGCCACCAAGUGGC   1
  *|||-|*|||||||||||*|||||
targets:99   AGUG-GCUGUCCGGUGGUGCACCG   121

2.5 Sequence 8119 from Patent EP2074227 NA coding protein psRNATarget
LQ242124.1
ncRNA:24   ACACGCUACAGGCCACCAAGUGGC   1
  *|||-|*|||||||||||*|||||
targets:99   AGUG-GCUGUCCGGUGGUGCACCG   121

2.5 Sequence 8119 from Patent EP2985353 NA coding protein psRNATarget
JB170455.1
ncRNA:24   ACACGCUACAGGCCACCAAGUGGC   1
  *|||-|*|||||||||||*|||||
targets:99   AGUG-GCUGUCCGGUGGUGCACCG   121

2.5 Sequence 8119 from Patent EP2559767 NA coding protein psRNATarget