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BaseInfo

ncRNA ID	novel_zma_miR3104
Species	Zea mays
Class	miRNA
Genome position	Chr10:17320263-17320359 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	74 - GUAGCAACGUACGGGCAUAUACCU - 97
Stem-loop(if miRNA)	--             A         -----------          UUAAUAUA   GUAUAUGCUCGUG GUUGCUAUG           AUAAAAUACA        C   ||||||||||||| |||||||||           ||||||||||   CAUAUACGGGCAU CAACGAUGC           UAUUUUGUGU        A UC             G         CUCAAUUAUAA          UAUAAAAA
Stem-loop sequence	GUAUAUGCUCGUGAGUUGCUAUGAUAAAAUACAUUAAUAUACAAAAAAUAUUGUGUUUUAUAAUAUUAACUCCGUAGCAACGUACGGGCAUAUACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165433.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||||||||||||=||||||||| targets:584   AGGUAUAUGCCCGUGCGUUGCUAC   607 Target Full Sequence	1.5	Zea mays AtS40-3 (LOC100303799), mRNA	NA	coding protein	psRNATarget
BT040517.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||||||||||||=||||||||| targets:584   AGGUAUAUGCCCGUGCGUUGCUAC   607 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0098J20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157052.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||||||||||||=||||||||| targets:660   AGGUAUAUGCCCGUGCGUUGCUAC   683 Target Full Sequence	1.5	Zea mays nuclear protein (LOC100284155), mRNA	NA	coding protein	psRNATarget
EU967295.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||||||||||||=||||||||| targets:660   AGGUAUAUGCCCGUGCGUUGCUAC   683 Target Full Sequence	1.5	Zea mays clone 301197 nuclear protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001352154.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||||||||||||=||||||||| targets:1231   AGGUAUAUGCCCGUGCGUUGCUAC   1254 Target Full Sequence	1.5	Zea mays GDSL esterase/lipase At1g71691-like (LOC103628962), mRNA	NA	coding protein	psRNATarget
XM_008650156.2	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||||||||||||=||||||||| targets:1998   AGGUAUAUGCCCGUGCGUUGCUAC   2021 Target Full Sequence	1.5	PREDICTED: Zea mays GDSL esterase/lipase At1g71691-like (LOC103628962), mRNA	NA	coding protein	psRNATarget
BT041253.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|||||||||=||||||||| targets:222   AGGUGUAUGCCCGUGCGUUGCUAC   245 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0016P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT016304.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|||||||||=||||||||| targets:1069   AGGUGUAUGCCCGUGCGUUGCUAC   1092 Target Full Sequence	1.5	Zea mays clone Contig137 mRNA sequence	NA	coding protein	psRNATarget
BT065294.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|||||||||=||||||||| targets:1159   AGGUGUAUGCCCGUGCGUUGCUAC   1182 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0085G10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678977.2	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|||||||||=||||||||| targets:1212   AGGUGUAUGCCCGUGCGUUGCUAC   1235 Target Full Sequence	1.5	PREDICTED: Zea mays fasciclin-like arabinogalactan protein 7 (LOC100281475), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001137820.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|||||||||=||||||||| targets:965   AGGUGUAUGCCCGUGCGUUGCUAC   988 Target Full Sequence	1.5	Zea mays uncharacterized LOC100192605 (LOC100192605), mRNA	NA	coding protein	psRNATarget
BT034628.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|||||||||=||||||||| targets:965   AGGUGUAUGCCCGUGCGUUGCUAC   988 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0003O14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653251.2	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|||||||||=||||||||| targets:2013   AGGUGUAUGCCCGUGCGUUGCUAC   2036 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100283163 (pco077553), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947553.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||||||||*|||=||||||||| targets:841   AGGUAUAUGCACGUGCGUUGCUAC   864 Target Full Sequence	2.5	Zea mays clone 346992 mRNA sequence	NA	coding protein	psRNATarget
EU975637.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|=||||||||||||||*|| targets:601   AGGUGUGUGCCCGUACGUUGCAAC   624 Target Full Sequence	2.5	Zea mays clone 495009 mRNA sequence	NA	coding protein	psRNATarget
XM_020537679.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   |*||=|||||||||=||||||||| targets:796   AAGUGUAUGCCCGUGCGUUGCUAC   819 Target Full Sequence	1.5	PREDICTED: Zea mays probable ubiquitin-conjugating enzyme E2 25 (LOC103628268), mRNA	NA	coding protein	psRNATarget
BT035675.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|=||||||||||||||*|| targets:1257   AGGUGUGUGCCCGUACGUUGCAAC   1280 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0076F19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148091.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=*||||||||=||||||||| targets:1323   AGGUGAAUGCCCGUGCGUUGCUAC   1346 Target Full Sequence	2.5	Zea mays two-component response regulator ARR3 (LOC100273679), mRNA	NA	coding protein	psRNATarget
BT041618.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=*||||||||=||||||||| targets:1323   AGGUGAAUGCCCGUGCGUUGCUAC   1346 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A23 mRNA, complete cds	NA	coding protein	psRNATarget
EU971380.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||||=|=||||||||||||||*|| targets:2649   AGGUGUGUGCCCGUACGUUGCAAC   2672 Target Full Sequence	2.5	Zea mays clone 363319 mRNA sequence	NA	coding protein	psRNATarget
BT066590.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||*|=*|||||||||||||||||| targets:1493   AGUUGGAUGCCCGUACGUUGCUAC   1516 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0033I10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001318963.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||*|=*|||||||||||||||||| targets:1637   AGUUGGAUGCCCGUACGUUGCUAC   1660 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100383208), mRNA	NA	coding protein	psRNATarget
EU947681.1	ncRNA:24   UCCA-UAUACGGGCAUGCAACGAUG   1   **||-||=|||||||=||||||||| targets:7   UAGUCAUGUGCCCGUGCGUUGCUAC   31 Target Full Sequence	2.5	Zea mays clone 351969 mRNA sequence	NA	coding protein	psRNATarget
EU966991.1	ncRNA:24   UCCA-UAUACGGGCAUGCAACGAUG   1   **||-||=|||||||=||||||||| targets:1770   UAGUCAUGUGCCCGUGCGUUGCUAC   1794 Target Full Sequence	2.5	Zea mays clone 298688 mRNA sequence	NA	coding protein	psRNATarget
EU940751.1	ncRNA:24   UCCAUAUACGGGCAUGCAACGAUG   1   ||*|=*||||||||=||||||||| targets:372   AGCUGAAUGCCCGUGCGUUGCUAC   395 Target Full Sequence	2.5	Zea mays clone 1061917 mRNA sequence	NA	coding protein	psRNATarget
EZ082926.1	ncRNA:21   AUAUACGGGCAUGCAACGAUG   1   |||||*|||||=||||||||| targets:1   UAUAUACCCGUGCGUUGCUAC   21 Target Full Sequence	2.5	TSA: Zea mays contig18569, mRNA sequence	NA	coding protein	psRNATarget