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BaseInfo

ncRNA ID	novel_zma_miR3100
Species	Zea mays
Class	miRNA
Genome position	Chr10:137153586-137153710 [-]
Reference genome	RefGen_v4
Source	SRR2089714;SRR1997865
Length	24
Mature sequence(if miRNA)	1 - GAGGCUGGGCUCGGGCGAGGCGAA - 24
Stem-loop(if miRNA)	--A    -         G           --------  U G     ------     CG          A    GCCU GCCCGAGCU GGCCUCGGGCG        AG C AAGGU      GCGCC  UUGCUUGAGG G    |||| ||||||||| |||||||||||        || | |||||      |||||  ||||||||||    CGGA CGGGCUCGG UCGGAGUCCGU        UC G UUCCG      UGCGG  AGCGGGCUCC A AAG    G         G           CCUUGUCA  U G     UCUAAG     --          C
Stem-loop sequence	AGCCUGCCCGAGCUGGGCCUCGGGCGAGUCGAAGGUGCGCCCGUUGCUUGAGGAGACCCUCGGGCGAGGCGUGAAUCUGCCUUGGUCUACUGUUCCUGCCUGAGGCUGGGCUCGGGCGAGGCGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539680.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   |||||||||||||||||||||||| targets:1165   UUCGCCUCGCCCGAGCCCAGCCUC   1188 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109940245 (LOC109940245), mRNA	NA	coding protein	psRNATarget
XM_020539680.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   |*||==|||||||||||||*|||| targets:797   UACGUUUCGCCCGAGCCCAACCUC   820 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940245 (LOC109940245), mRNA	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   *||||||||||||||||||||||| targets:26   CUCGCCUCGCCCGAGCCCAGCCUC   49 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget
EU952221.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   *||||||||||||||||||||||| targets:31   CUCGCCUCGCCCGAGCCCAGCCUC   54 Target Full Sequence	0.0	Zea mays clone 1229283 mRNA sequence	NA	coding protein	psRNATarget
XM_020541001.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   *||||||||||||||||||||||| targets:4778   CUCGCCUCGCCCGAGCCCAGCCUC   4801 Target Full Sequence	0.0	PREDICTED: Zea mays plasma membrane ATPase 2-like (LOC103632998), transcript variant X36, mRNA	NA	coding protein	psRNATarget
EZ090153.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   **|||||||||||||||=|||||| targets:58   CACGCCUCGCCCGAGCCUAGCCUC   81 Target Full Sequence	1.5	TSA: Zea mays contig25799, mRNA sequence	NA	coding protein	psRNATarget
EU940901.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   *|||||||*||||||||||||||| targets:384   CUCGCCUCACCCGAGCCCAGCCUC   407 Target Full Sequence	1.0	Zea mays clone 1168199 mRNA sequence	NA	coding protein	psRNATarget
EU940899.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   *||*|||||||||||||||||||| targets:684   CUCACCUCGCCCGAGCCCAGCCUC   707 Target Full Sequence	0.0	Zea mays clone 1168123 mRNA sequence	NA	coding protein	psRNATarget
XM_020541624.1	ncRNA:24   AAGCGGAGCGGGCUCGGGUCGGAG   1   *||*|||||||||||||||||||| targets:678   CUCACCUCGCCCGAGCCCAGCCUC   701 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103644648 (LOC103644648), mRNA	NA	coding protein	psRNATarget