Search result

BaseInfo

ncRNA ID novel_zma_miR3092
Species Zea mays
Class miRNA
Genome position Chr1:25316464-25316574 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2089700;SRR2089703
Length 22
Mature sequence(if miRNA) 90 - AAUCCAUAUGGAUUGGGGUUGA - 111
Stem-loop(if miRNA) --AU     U             G    -      UAUGGAUU    GAGAUUUUGACUU
    UUCCA UCCAUAUGGAUUG AGGG GAUUGA        GUGA             A
    ||||| ||||||||||||| |||| ||||||        ||||
    GGGGU AGGUAUACCUAAC UCCU CUAACU        CCCU             U
AGUU     U             -    A      -------C    CAAAGUUAGGGAU
Stem-loop sequence AUUUCCAUUCCAUAUGGAUUGGAGGGGAUUGAUAUGGAUUGUGAGAGAUUUUGACUUAUUAGGGAUUGAAACUCCCCUCAAUCAUCCUCAAUCCAUAUGGAUUGGGGUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238773.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:20   UCUACCCCAAUCCAUAUGGAUU   41

0.0 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
JB167104.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:20   UCUACCCCAAUCCAUAUGGAUU   41

0.0 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
HI406643.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:20   UCUACCCCAAUCCAUAUGGAUU   41

0.0 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
EZ061352.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:120   UCUACCCCAAUCCAUAUGGAUU   141

0.0 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
EU944315.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |=||=||=||||||||||||||
targets:97   UUAAUCCUAAUCCAUAUGGAUU   118

2.0 Zea mays clone 210152 mRNA sequence NA coding protein psRNATarget
NM_001348011.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:367   UCUACCCCAAUCCAUAUGGAUU   388

0.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
XM_020549355.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:861   UCUACCCCAAUCCAUAUGGAUU   882

0.0 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:706   UCUACCCCAAUCCAUAUGGAUU   727

0.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:848   UCUACCCCAAUCCAUAUGGAUU   869

0.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959258.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:794   UCUACCCCAAUCCAUAUGGAUU   815

0.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:795   UCUACCCCAAUCCAUAUGGAUU   816

0.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU961636.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:1051   UCUACCCCAAUCCAUAUGGAUU   1072

0.0 Zea mays clone 237217 mRNA sequence NA coding protein psRNATarget
XM_008666525.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:867   UCUACCCCAAUCCAUAUGGAUU   888

0.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_008672211.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:893   UCUACCCCAAUCCAUAUGGAUU   914

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:1912   UCUACCCCAAUCCAUAUGGAUU   1933

0.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:1912   UCUACCCCAAUCCAUAUGGAUU   1933

0.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:1685   UCUACCCCAAUCCAUAUGGAUU   1706

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||||
targets:899   UCUACCCCAAUCCAUAUGGAUU   920

0.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008648001.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |||*||||||||||||||||||
targets:3963   UCACCCCCAAUCCAUAUGGAUU   3984

1.0 PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648000.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |||*||||||||||||||||||
targets:4057   UCACCCCCAAUCCAUAUGGAUU   4078

1.0 PREDICTED: Zea mays DExH-box ATP-dependent RNA helicase DExH15 chloroplastic (LOC103627701), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:22   AGU-UGGGGUUAGGUAUACCUAA   1
  |=|-|||||||||||||||||||
targets:1619   UUAUACCCCAAUCCAUAUGGAUU   1641

2.0 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
EZ049486.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |=||=|==||||||||||||||
targets:355   UUAAUCUUAAUCCAUAUGGAUU   376

3.0 TSA: Zea mays contig50604, mRNA sequence NA coding protein psRNATarget
XM_020550074.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |==|=|=|||||||||||||||
targets:717   UUGAUCUCAAUCCAUAUGGAUU   738

2.0 PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550075.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |==|=|=|||||||||||||||
targets:725   UUGAUCUCAAUCCAUAUGGAUU   746

2.0 PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X2, mRNA NA coding protein psRNATarget
EU959055.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |**|||||||||||||||||||
targets:796   UYUACCCCAAUCCAUAUGGAUU   817

0.0 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU959053.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||||*|
targets:794   UCUACCCCAAUCCAUAUGGAKU   815

1.5 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU953075.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||=|||||||||
targets:931   UCUACCCCAAUCUAUAUGGAUU   952

1.5 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
BT035012.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |||*||=|||||||||||||||
targets:1612   UCACCCUCAAUCCAUAUGGAUU   1633

2.0 Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds NA coding protein psRNATarget
NM_001138093.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |||*||=|||||||||||||||
targets:1612   UCACCCUCAAUCCAUAUGGAUU   1633

2.0 Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA NA coding protein psRNATarget
EU956568.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||=|||||||||||||||
targets:1552   UCUACCUCAAUCCAUAUGGAUU   1573

1.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_020539810.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|*|||||||||||||||||
targets:632   UCUAACCCAAUCCAUAUGGAUU   653

1.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
BT064935.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*||=||||||=|||||||||
targets:760   UCUACUCCAAUCUAUAUGGAUU   781

2.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
XM_008658561.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||=||||||||||*||||
targets:223   UCUACCUCAAUCCAUAUAGAUU   244

2.5 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_008671080.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |=||=|=||||||||||||||*
targets:2972   UUAAUCUCAAUCCAUAUGGAUC   2993

3.0 PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646346), mRNA NA coding protein psRNATarget
XM_020538899.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |=|||=||||||||||||*|||
targets:2836   UUAACUCCAAUCCAUAUGUAUU   2857

2.5 PREDICTED: Zea mays uncharacterized LOC100279199 (LOC100279199), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538898.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  |=|||=||||||||||||*|||
targets:4926   UUAACUCCAAUCCAUAUGUAUU   4947

2.5 PREDICTED: Zea mays uncharacterized LOC100279199 (LOC100279199), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008654469.2
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|||||||||||||||*|||
targets:3042   UCUACCCCAAUCCAUAUGUAUU   3063

1.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
EZ073290.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  *|||=|||||||*|||||||||
targets:2   ACAAUCCCAAUCAAUAUGGAUU   23

2.5 TSA: Zea mays contig08927, mRNA sequence NA coding protein psRNATarget
BT016901.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  *|||=|||||||*|||||||||
targets:59   ACAAUCCCAAUCAAUAUGGAUU   80

2.5 Zea mays clone Contig734 mRNA sequence NA coding protein psRNATarget
EZ068230.1
ncRNA:22   AGUUGGGGUUAGGUAUACCUAA   1
  ||*|*|||||||||||||||||
targets:42   UCUAGCCCAAUCCAUAUGGAUU   63

1.0 TSA: Zea mays contig03865, mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.