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BaseInfo

ncRNA ID novel_zma_miR3090
Species Zea mays
Class miRNA
Genome position Chr1:24713665-24713728 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2089715;SRR2287159;SRR2287164;SRR2287165;SRR5451004;SRR5451005;SRR2089705
Length 24
Mature sequence(if miRNA) 41 - CGGUGAACCACCGGACAUCGCACA - 64
Stem-loop(if miRNA) --   -          -CA           GCA
  UGC AUGUCCGGUG   CACCGGACAGC   C
  ||| ||||||||||   |||||||||||
  ACG UACAGGCCAC   GUGGCCUGUCG   A
AC   C          CAA           AUA
Stem-loop sequence UGCAUGUCCGGUGCACACCGGACAGCGCACAAUAGCUGUCCGGUGAACCACCGGACAUCGCACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409994.1
ncRNA:24   ACACGCUACAGGCCACCAAGUGGC   1
  *|||-|*|||||||||||*|||||
targets:99   AGUG-GCUGUCCGGUGGUGCACCG   121

2.5 Sequence 8119 from Patent EP2074227 NA coding protein psRNATarget
JB170455.1
ncRNA:24   ACACGCUACAGGCCACCAAGUGGC   1
  *|||-|*|||||||||||*|||||
targets:99   AGUG-GCUGUCCGGUGGUGCACCG   121

2.5 Sequence 8119 from Patent EP2559767 NA coding protein psRNATarget
LQ242124.1
ncRNA:24   ACACGCUACAGGCCACCAAGUGGC   1
  *|||-|*|||||||||||*|||||
targets:99   AGUG-GCUGUCCGGUGGUGCACCG   121

2.5 Sequence 8119 from Patent EP2985353 NA coding protein psRNATarget