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BaseInfo

ncRNA ID novel_zma_miR3088
Species Zea mays
Class miRNA
Genome position Chr7:6995659-6995734 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 53 - AUCUCAGUCGUUGGUUUAGCGAUG - 76
Stem-loop(if miRNA) --    CG U          GU       ACCGUUUCA
  UCGU  A CCAACGGCUG  GUUGCGU         U
  ||||  | ||||||||||  |||||||
  AGCG  U GGUUGCUGAC  UAAUGUA         A
GU    AU U          UC       ACAUUAACA
Stem-loop sequence UCGUCGAUCCAACGGCUGGUGUUGCGUACCGUUUCAUAACAAUUACAAUGUAAUCUCAGUCGUUGGUUUAGCGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ105785.1
ncRNA:24   GUAGCGAUUUGGUUGCUGACUCUA   1
  =**|||||||||||||||||*||*
targets:21   UCCCGCUAAACCAACGACUGCGAC   44

2.5 TSA: Zea mays contig41443, mRNA sequence NA coding protein psRNATarget