Search result

BaseInfo

ncRNA ID novel_zma_miR3084
Species Zea mays
Class miRNA
Genome position Chr1:237848675-237848766 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2089700;SRR2089707
Length 24
Mature sequence(if miRNA) 69 - AGGCAAAGUGUGACAAUUGAGGUA - 92
Stem-loop(if miRNA) ---  AAAUG                -------------        CG   G
   CU     UGUCACACUUUGCCUA             AGGUUAGU  UUC A
   ||     ||||||||||||||||             ||||||||  ||| A
   GA     ACAGUGUGAAACGGAU             UCUAAUCA  AAG U
AUG  -GUUA                UGAAAAGACGGAU        AU   U
Stem-loop sequence CUAAAUGUGUCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAAUCUUAGGCAGAAAAGUUAGGCAAAGUGUGACAAUUGAGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064583.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |||||||=|||*||||||||||||
targets:1647   UACCUCAGUUGCCACACUUUGCCU   1670

2.5 Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds NA coding protein psRNATarget
NM_001150092.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |||||||=|||*||||||||||||
targets:1717   UACCUCAGUUGCCACACUUUGCCU   1740

2.5 Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA NA coding protein psRNATarget
EU960971.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |||||||=|||*||||||||||||
targets:1717   UACCUCAGUUGCCACACUUUGCCU   1740

2.5 Zea mays clone 230073 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU945170.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |=|||||=|||*||||||||||||
targets:855   UGCCUCAGUUGCCACACUUUGCCU   878

2.5 Zea mays clone 243250 mRNA sequence NA coding protein psRNATarget
EU966347.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |=|||||=|||*||||||||||||
targets:1339   UGCCUCAGUUGCCACACUUUGCCU   1362

2.5 Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds NA coding protein psRNATarget
EU958119.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |||||*|*||||||||||||||||
targets:933   UACCUAACUUGUCACACUUUGCCU   956

2.0 Zea mays clone 1674247 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149797.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |||||*|*||||||||||||||||
targets:933   UACCUAACUUGUCACACUUUGCCU   956

2.0 Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
LQ235416.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |=|||*|*||||||||||||||||
targets:19   UGCCUAACUUGUCACACUUUGCCU   42

2.0 Sequence 1411 from Patent EP2985353 NA coding protein psRNATarget
JB163747.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |=|||*|*||||||||||||||||
targets:19   UGCCUAACUUGUCACACUUUGCCU   42

2.0 Sequence 1411 from Patent EP2559767 NA coding protein psRNATarget
HI403286.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |=|||*|*||||||||||||||||
targets:19   UGCCUAACUUGUCACACUUUGCCU   42

2.0 Sequence 1411 from Patent EP2074227 NA coding protein psRNATarget
BT065116.1
ncRNA:24   AU-GGAGUUAACAGUGUGAAACGGA   1
  ||-|||||*|||*||||||||||||
targets:979   UAGCCUCACUUGCCACACUUUGCCU   1003

2.5 Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds NA coding protein psRNATarget
XM_020542662.1
ncRNA:24   AUGGAGUUA-ACAGUGUGAAACGGA   1
  |=*=|*|||-|||||||||||||||
targets:1045   UGGUUAAAUGUGUCACACUUUGCCU   1069

3.0 PREDICTED: Zea mays uncharacterized LOC100283356 (LOC100283356), mRNA NA coding protein psRNATarget
LQ235498.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |==||*|*||*|||||||||||||
targets:19   UGUCUAACUUAUCACACUUUGCCU   42

3.0 Sequence 1493 from Patent EP2985353 NA coding protein psRNATarget
HI403368.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |==||*|*||*|||||||||||||
targets:19   UGUCUAACUUAUCACACUUUGCCU   42

3.0 Sequence 1493 from Patent EP2074227 NA coding protein psRNATarget
JB163829.1
ncRNA:24   AUGGAGUUAACAGUGUGAAACGGA   1
  |==||*|*||*|||||||||||||
targets:19   UGUCUAACUUAUCACACUUUGCCU   42

3.0 Sequence 1493 from Patent EP2559767 NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.