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BaseInfo

ncRNA ID	osa-miR1861j
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:15132727-15132836 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	76 - CGGUCUUGAGGCAGGAACUGAG - 97
Stem-loop(if miRNA)	U     CC       A           A  A  U       UC  UCU AUAUUC UAGGC  GGUCUUG GGCAGGAACUG GU GU GGUGAAC  GC   A |||||| |||||  ||||||| ||||||||||| || || |||||||  || UAUAAG GUCUG  UCGGAAC CUGUCCUUGAC CA CG UCACUUG  UG   U       U     AA       C           A  G  C       CU  UUG
Stem-loop sequence	AUAUUCUUAGGCCCGGUCUUGAGGCAGGAACUGAGUAGUUGGUGAACUCGCUCUAUGUUGUUCGUUCACUCGCGACACAGUUCCUGUCCCAAGGCUAAGUCUGUGAAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107823.1	ncRNA:22   GAGUCAAGGACGGAGUUCUGGC   1   |*|||||=||*||||||||||| targets:533   CCCAGUUUCUUCCUCAAGACCG   554 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-133-G03, full insert sequence	NA	coding protein	psRNATarget
AK242147.1	ncRNA:22   GAGUCAAGGACGGAGUUCUGGC   1   |*|||||=||*||||||||||| targets:1820   CCCAGUUUCUUCCUCAAGACCG   1841 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075152E01, full insert sequence	NA	coding protein	psRNATarget
AJ535212.1	ncRNA:22   GAGUCAAGGACGGAGUUCUGGC   1   |*|||||=||*||||||||||| targets:443   CCCAGUUUCUUCCUCAAGACCG   464 Target Full Sequence	2.5	Oryza sativa mRNA for SMC5 protein	NA	coding protein	psRNATarget
AK121149.1	ncRNA:22   GAGUCAAGGACGGAGUUCUGGC   1   |*|||||=||*||||||||||| targets:534   CCCAGUUUCUUCCUCAAGACCG   555 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023078H05, full insert sequence	NA	coding protein	psRNATarget
XM_015783930.1	ncRNA:22   GAGUCAAGGACGGAGUUCUGGC   1   |*|||||=||*||||||||||| targets:588   CCCAGUUUCUUCCUCAAGACCG   609 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group structural maintenance of chromosomes protein 5 (LOC4339821), mRNA	structural maintenance of chromosomes protein 5(LOC4339821)	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).