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BaseInfo

ncRNA ID novel_zma_miR3073
Species Zea mays
Class miRNA
Genome position Chr9:20713431-20713591 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR4237227;SRR5451003;SRR5451005;SRR5451006;SRR2089699;SRR2089700;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - AAACAUUCUGAUUUGCAGCCGGCU - 24
Stem-loop(if miRNA) --             UA                         GA   AUUAAC           -AUCCACU G     AU
  CCGGCUGUAAAUC  AAUGUUUGUAGCUCCUCACAAAAAA  AGG      UCCACCUGCAG        A AUAAC  U
  |||||||||||||  |||||||||||||||||||||||||  |||      |||||||||||        | |||||
  GGCCGACGUUUAG  UUACAAACGUCGAGGAGUGUUUUUU  UCC      AGGUGGAUGUC        U UAUUG  U
UC             UC                         UC   AAACUA           GUCAUAAU G     AU
Stem-loop sequence CCGGCUGUAAAUCUAAAUGUUUGUAGCUCCUCACAAAAAAGAAGGAUUAACUCCACCUGCAGAUCCACUAGAUAACAUUUUAGUUAUGUUAAUACUGCUGUAGGUGGAAUCAAACCUCUUUUUUUGUGAGGAGCUGCAAACAUUCUGAUUUGCAGCCGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT033928.1
ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1
  ||||*||||||||*||||||||||
targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082

1.5 Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds NA coding protein psRNATarget
NM_001137162.1
ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1
  ||||*||||||||*||||||||||
targets:2059   AGCCCGCUGCAAAACAGAAUGUUU   2082

1.5 Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA NA coding protein psRNATarget
XM_008682759.2
ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1
  ||||*||||||||*||||||||||
targets:2497   AGCCCGCUGCAAAACAGAAUGUUU   2520

1.5 PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682758.2
ncRNA:24   UCGGCCGACGUUUAGUCUUACAAA   1
  ||||*||||||||*||||||||||
targets:2500   AGCCCGCUGCAAAACAGAAUGUUU   2523

1.5 PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA NA coding protein psRNATarget
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