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BaseInfo

ncRNA ID novel_zma_miR3071
Species Zea mays
Class miRNA
Genome position Chr6:71147581-71147720 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467;SRR1583943
Length 24
Mature sequence(if miRNA) 117 - GAUCUUUUAAUGGUAUGAUCCAAA - 140
Stem-loop(if miRNA) --      U                CAA     A   A        GG  CCCAC  G     GACU      G
  UGGAUC AUACCAUUAAAAGAUC   ACUUU GAU UAUACCAU  AC     AU UCAUU    CAUGUG A
  |||||| ||||||||||||||||   ||||| ||| ||||||||  ||     || |||||    ||||||
  ACCUAG UAUGGUAAUUUUCUAG   UGAAA CUA GUAUGGUA  UG     UA AGUGA    GUACAC C
AA      -                UGG     C   G        -A  ----A  G     --AU      C
Stem-loop sequence UGGAUCUAUACCAUUAAAAGAUCCAAACUUUAGAUAUAUACCAUGGACCCCACAUGUCAUUGACUCAUGUGGACCCACAUGUAAGUGAGAUAGUAAUGGUAUGGAUCCAAAGUGGUGAUCUUUUAAUGGUAUGAUCCAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008656647.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:513   UUUGGAUCCAUACCAUUAAAAGAUC   537

2.0 PREDICTED: Zea mays Jasmonic acid-amido synthetase JAR1 (pco121700), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008663819.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:2524   UUUGGAUCCAUACCAUUAAAAGAUC   2548

2.0 PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC103640598), mRNA NA coding protein psRNATarget
EU957674.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:1441   UUUGGAUCCAUACCAUUAAAAGAUC   1465

2.0 Zea mays clone 1602824 mRNA sequence NA coding protein psRNATarget
BT018806.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:972   UUUGGAUCCAUACCAUUAAAAGAUC   996

2.0 Zea mays clone EL01N0529G07.d mRNA sequence NA coding protein psRNATarget
XM_008647507.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:1093   UUUGGAUCCAUACCAUUAAAAGAUC   1117

2.0 PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647508.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:1083   UUUGGAUCCAUACCAUUAAAAGAUC   1107

2.0 PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X3, mRNA NA coding protein psRNATarget
BT061333.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:30   UUUGGAUCCAUACCAUUAAAAGAUC   54

2.0 Zea mays full-length cDNA clone ZM_BFb0136G21 mRNA, complete cds NA coding protein psRNATarget
XM_008647506.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:1007   UUUGGAUCCAUACCAUUAAAAGAUC   1031

2.0 PREDICTED: Zea mays nudix hydrolase 12, mitochondrial (LOC103627211), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539543.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:1136   UUUGGAUCCAUACCAUUAAAAGAUC   1160

2.0 PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X3, mRNA NA coding protein psRNATarget
AY103623.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:614   UUUGGAUCCAUACCAUUAAAAGAUC   638

2.0 Zea mays PCO141453 mRNA sequence NA coding protein psRNATarget
XM_008651355.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:1116   UUUGGAUCCAUACCAUUAAAAGAUC   1140

2.0 PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001150698.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:586   UUUGGAUCCAUACCAUUAAAAGAUC   610

2.0 Zea mays hypothetical protein (pco141453a), mRNA NA coding protein psRNATarget
EU966308.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:586   UUUGGAUCCAUACCAUUAAAAGAUC   610

2.0 Zea mays clone 293420 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU952279.1
ncRNA:24   AAACCUA-GUAUGGUAAUUUUCUAG   1
  |||||||-|||||||||||||||||
targets:624   UUUGGAUUCAUACCAUUAAAAGAUC   648

2.0 Zea mays clone 1275160 mRNA sequence NA coding protein psRNATarget
EU962525.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:585   UUUGGAUCCAUACCAUUAAAAGAUC   609

2.0 Zea mays clone 243450 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968126.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:649   UUUGGAUCCAUACCAUUAAAAGAUC   673

2.0 Zea mays clone 314826 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150925.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:648   UUUGGAUCCAUACCAUUAAAAGAUC   672

2.0 Zea mays uncharacterized LOC100277330 (LOC100277330), mRNA NA coding protein psRNATarget
EU951591.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:330   UUUGGAUCCAUACCAUUAAAAGAUC   354

2.0 Zea mays clone 896699 mRNA sequence NA coding protein psRNATarget
XM_008651354.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:774   UUUGGAUCCAUACCAUUAAAAGAUC   798

2.0 PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651356.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:746   UUUGGAUCCAUACCAUUAAAAGAUC   770

2.0 PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008651357.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:600   UUUGGAUCCAUACCAUUAAAAGAUC   624

2.0 PREDICTED: Zea mays uncharacterized LOC103630291 (LOC103630291), transcript variant X5, mRNA NA coding protein psRNATarget
EZ104432.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  ||||||||-||||||||||||||||
targets:9   UUUGGAUCCAUACCAUUAAAAGAUC   33

2.0 TSA: Zea mays contig40089, mRNA sequence NA coding protein psRNATarget
XM_008648225.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:1634   AUUGGAUCUAUACCAUUAAAAGAUC   1658

2.0 PREDICTED: Zea mays hypothetical protein (LOC103627911), mRNA NA coding protein psRNATarget
XM_008657786.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:3373   AUUGGAUCCAUACCAUUAAAAGAUC   3397

2.0 PREDICTED: Zea mays uncharacterized LOC103635295 (LOC103635295), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657786.2
ncRNA:24   AAACCUAGUAUGGUAAUUUUCUAG   1
  *|||*|*=|||||||||||||||*
targets:3433   AUUGAAAUAUACCAUUAAAAGAUA   3456

3.0 PREDICTED: Zea mays uncharacterized LOC103635295 (LOC103635295), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657787.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:3370   AUUGGAUCCAUACCAUUAAAAGAUC   3394

2.0 PREDICTED: Zea mays uncharacterized LOC103635295 (LOC103635295), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657787.2
ncRNA:24   AAACCUAGUAUGGUAAUUUUCUAG   1
  *|||*|*=|||||||||||||||*
targets:3430   AUUGAAAUAUACCAUUAAAAGAUA   3453

3.0 PREDICTED: Zea mays uncharacterized LOC103635295 (LOC103635295), transcript variant X2, mRNA NA coding protein psRNATarget
BT066756.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:556   AUUGGAUCUAUACCAUUAAAAGAUC   580

2.0 Zea mays full-length cDNA clone ZM_BFb0062I06 mRNA, complete cds NA coding protein psRNATarget
NM_001175935.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:556   AUUGGAUCUAUACCAUUAAAAGAUC   580

2.0 Zea mays Sphingosine kinase 1 (LOC100383275), mRNA NA coding protein psRNATarget
XM_008653076.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:2193   AUUGGAUCUAUACCAUUAAAAGAUC   2217

2.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100279284), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001152305.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:2112   AUUGGAUCUAUACCAUUAAAAGAUC   2136

2.0 Zea mays Protein kinase superfamily protein (LOC100279284), mRNA NA coding protein psRNATarget
BT053964.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:2112   AUUGGAUCUAUACCAUUAAAAGAUC   2136

2.0 Zea mays full-length cDNA clone ZM_BFc0078N16 mRNA, complete cds NA coding protein psRNATarget
XM_008653075.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:2193   AUUGGAUCUAUACCAUUAAAAGAUC   2217

2.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100279284), transcript variant X1, mRNA NA coding protein psRNATarget
EU943177.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:895   AUUGGAUCUAUACCAUUAAAAGAUC   919

2.0 Zea mays clone 1578012 mRNA sequence NA coding protein psRNATarget
BT083634.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:508   AUUGGAUCUAUACCAUUAAAAGAUC   532

2.0 Zea mays full-length cDNA clone ZM_BFb0021H22 mRNA, complete cds NA coding protein psRNATarget
XM_008672158.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:804   AUUGGAUCUAUACCAUUAAAAGAUC   828

2.0 PREDICTED: Zea mays mitochondrial amidoxime reducing component 2-like (LOC103647658), transcript variant X2, mRNA NA coding protein psRNATarget
EU969943.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:759   AUUGGAUCUAUACCAUUAAAAGAUC   783

2.0 Zea mays clone 337662 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU977072.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-||||||||||||||||
targets:588   AUUGGAUCUAUACCAUUAAAAGAUC   612

2.0 Zea mays clone 998204 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008669273.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1117   AUUGGAUCUAUACCAUUAAAAGAUU   1141

3.0 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669274.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1108   AUUGGAUCUAUACCAUUAAAAGAUU   1132

3.0 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X2, mRNA NA coding protein psRNATarget
AY105630.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1082   AUUGGAUCUAUACCAUUAAAAGAUU   1106

3.0 Zea mays PCO073836 mRNA sequence NA coding protein psRNATarget
XM_008669275.2
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1090   AUUGGAUCUAUACCAUUAAAAGAUU   1114

3.0 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X3, mRNA NA coding protein psRNATarget
BT085518.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1071   AUUGGAUCUAUACCAUUAAAAGAUU   1095

3.0 Zea mays full-length cDNA clone ZM_BFc0028K04 mRNA, complete cds NA coding protein psRNATarget
EU965045.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1073   AUUGGAUCUAUACCAUUAAAAGAUU   1097

3.0 Zea mays clone 283433 mRNA sequence NA coding protein psRNATarget
NM_001147320.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1085   AUUGGAUCUAUACCAUUAAAAGAUU   1109

3.0 Zea mays Phosphomannomutase (umc2246), mRNA NA coding protein psRNATarget
BT039634.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1085   AUUGGAUCUAUACCAUUAAAAGAUU   1109

3.0 Zea mays full-length cDNA clone ZM_BFc0035I13 mRNA, complete cds NA coding protein psRNATarget
BT039627.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1079   AUUGGAUCUAUACCAUUAAAAGAUU   1103

3.0 Zea mays full-length cDNA clone ZM_BFc0035C20 mRNA, complete cds NA coding protein psRNATarget
BT063220.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  *|||||||-|||||||||||||||=
targets:1001   AUUGGAUCUAUACCAUUAAAAGAUU   1025

3.0 Zea mays full-length cDNA clone ZM_BFc0039G24 mRNA, complete cds NA coding protein psRNATarget
XM_020549784.1
ncRNA:24   AAACCUAG-UAUGGUAAUUUUCUAG   1
  **|*||||-|||||||||||||||=
targets:1038   ACUAGAUCUAUACCAUUAAAAGAUU   1062

3.0 PREDICTED: Zea mays YLS9 (LOC100284750), transcript variant X1, mRNA NA coding protein psRNATarget
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