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BaseInfo

ncRNA ID novel_zma_miR3070
Species Zea mays
Class miRNA
Genome position Chr9:97101661-97101783 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR2287163
Length 24
Mature sequence(if miRNA) 100 - AGGGCUGAUUUGGUGAUCCGGGAU - 123
Stem-loop(if miRNA) --    C            -CC      C                               UA
  AGGG UGAUUUGGUGAU   GGGAUC CGGGAGGAUUGGAGGGGAUUGAGGGGGAAAU  G
  |||| ||||||||||||   |||||| |||||||||||||||||||||||||||||||
  UCCC ACUAAACCACUG   CCCUAG GCCCUCCUAACCUCCCCUAACUCCCCCUUUA  U
AU    A            UUA      U                               UU
Stem-loop sequence AGGGCUGAUUUGGUGAUCCGGGAUCCCGGGAGGAUUGGAGGGGAUUGAGGGGGAAAUUAGUUUAUUUCCCCCUCAAUCCCCUCCAAUCCUCCCGUGAUCCCAUUGUCACCAAAUCAACCCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950017.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||||=||||||||||||||||
targets:512   AUCCCGGGUCACCAAAUCAGCCCU   535

1.0 Zea mays clone 457681 mRNA sequence NA coding protein psRNATarget
XM_020540504.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||||=||||||||||||||||
targets:1877   AUCCCGGGUCACCAAAUCAGCCCU   1900

1.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540503.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||||=||||||||||||||||
targets:2315   AUCCCGGGUCACCAAAUCAGCCCU   2338

1.0 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA NA coding protein psRNATarget
HI403445.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=||||||||||||||||
targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84

2.0 Sequence 1570 from Patent EP2074227 NA coding protein psRNATarget
JB163906.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=||||||||||||||||
targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84

2.0 Sequence 1570 from Patent EP2559767 NA coding protein psRNATarget
LQ235575.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=||||||||||||||||
targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84

2.0 Sequence 1570 from Patent EP2985353 NA coding protein psRNATarget
HI403301.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=||||||||||||||||
targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119

2.0 Sequence 1426 from Patent EP2074227 NA coding protein psRNATarget
JB163762.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=||||||||||||||||
targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119

2.0 Sequence 1426 from Patent EP2559767 NA coding protein psRNATarget
LQ235431.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=||||||||||||||||
targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119

2.0 Sequence 1426 from Patent EP2985353 NA coding protein psRNATarget
BT088155.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  ||||||*||||||||||||||=||
targets:1493   AUCCCGAAUCACCAAAUCAGCUCU   1516

2.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
XM_020551688.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||||=|||||||||||*||||
targets:2180   AUCCCGGGUCACCAAAUCAACCCU   2203

2.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671854.2
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=||||||||||||||||
targets:70   AUCCCCGGUCACCAAAUCAGCCCU   93

2.0 PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001317055.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  ||=||||=||||||||||||||*|
targets:1528   AUUCCGGGUCACCAAAUCAGCCAU   1551

2.5 Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA NA coding protein psRNATarget
BT042257.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  ||=||||=||||||||||||||*|
targets:1528   AUUCCGGGUCACCAAAUCAGCCAU   1551

2.5 Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds NA coding protein psRNATarget
XM_008675221.2
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|=|||||||||||||||*
targets:180   AUCCCUGGUCACCAAAUCAGCCCG   203

3.0 PREDICTED: Zea mays gibberellin responsive 1 (gar1), transcript variant X2, mRNA NA coding protein psRNATarget
JB170445.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|||||||||||||||*||
targets:113   AUCCCUGAUCACCAAAUCAGCACU   136

2.5 Sequence 8109 from Patent EP2559767 NA coding protein psRNATarget
HI409984.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|||||||||||||||*||
targets:113   AUCCCUGAUCACCAAAUCAGCACU   136

2.5 Sequence 8109 from Patent EP2074227 NA coding protein psRNATarget
LQ242114.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||*|||||||||||||||*||
targets:113   AUCCCUGAUCACCAAAUCAGCACU   136

2.5 Sequence 8109 from Patent EP2985353 NA coding protein psRNATarget
BT018533.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  *||=|*|||||=||||||||||||
targets:1918   UUCUCUGAUCAUCAAAUCAGCCCU   1941

2.5 Zea mays clone EL01N0434E06.d mRNA sequence NA coding protein psRNATarget
XM_020538171.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  =||||*||||||||||||||*|||
targets:1   GUCCCUGAUCACCAAAUCAGACCU   24

2.5 PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545246.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||**||||||||||||||||*
targets:152   AUCCCUAAUCACCAAAUCAGCCCG   175

3.0 PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA NA coding protein psRNATarget
EU943476.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||==|||**||||||||||||||
targets:990   AUCUUGGAAAACCAAAUCAGCCCU   1013

2.0 Zea mays clone 1625592 mRNA sequence NA coding protein psRNATarget
NM_001175907.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||**|*|||||||||||||||
targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362

3.0 Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA NA coding protein psRNATarget
BT066676.1
ncRNA:24   UAGGGCCUAGUGGUUUAGUCGGGA   1
  |||||**|*|||||||||||||||
targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362

3.0 Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds NA coding protein psRNATarget
XM_020539542.1
ncRNA:24   UAGG-GCCUAGUGGUUUAGUCGGGA   1
  ||||-|**=||||||||||||||||
targets:161   AUCCACUUGUCACCAAAUCAGCCCU   185

3.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008651348.2
ncRNA:24   UAGG-GCCUAGUGGUUUAGUCGGGA   1
  ||||-|**=||||||||||||||||
targets:161   AUCCACUUGUCACCAAAUCAGCCCU   185

3.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539541.1
ncRNA:24   UAGG-GCCUAGUGGUUUAGUCGGGA   1
  ||||-|**=||||||||||||||||
targets:161   AUCCACUUGUCACCAAAUCAGCCCU   185

3.0 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA NA coding protein psRNATarget
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