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BaseInfo

ncRNA ID novel_zma_miR3066
Species Zea mays
Class miRNA
Genome position Chr6:64572596-64572653 [+]
Reference genome RefGen_v4
Source SRR1583944;SRR2647221;SRR2647343;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR1583943
Length 24
Mature sequence(if miRNA) 35 - CUCUAGAAAGUUAUGUAACUUCCU - 58
Stem-loop(if miRNA) --        U    GUC       A AU
  GAAGUUAU UAAC   CUAGAGU C  G
  |||||||| ||||   ||||||| |
  CUUCAAUG AUUG   GAUCUCA G  U
UC        U    AAA       A CA
Stem-loop sequence GAAGUUAUUUAACGUCCUAGAGUACAUGUACGAACUCUAGAAAGUUAUGUAACUUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949881.1
ncRNA:24   UCCUUCAAUGUAUUGAAAGAUCUC   1
  ||||||||||*||||||*||||||
targets:945   AGGAAGUUACUUAACUUCCUAGAG   968

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget
EU949881.1
ncRNA:24   UCCUUCAAUGUAUUGAAAGAUCUC   1
  ||*|||||||*||||||*||||||
targets:905   AGCAAGUUACUUAACUUCCUAGAG   928

2.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget