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BaseInfo

ncRNA ID novel_zma_miR3061
Species Zea mays
Class miRNA
Genome position Chr6:46326142-46326191 [+]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 27 - CUUUAAUAUCUACCAAAUUCAGGU - 50
Stem-loop(if miRNA) -           -      A   UU
 CCUGAAUUUGG GGGUAU AAA  U
 ||||||||||| |||||| |||
 GGACUUAAACC UCUAUA UUU  C
U           A      A   CU
Stem-loop sequence CCUGAAUUUGGGGGUAUAAAAUUUCUCUUUAAUAUCUACCAAAUUCAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542196.1
ncRNA:24   UGGACUUAAACCAUCUAUAAUUUC   1
  |||||||||||||||||||||=||
targets:3718   ACCUGAAUUUGGUAGAUAUUAGAG   3741

1.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X6, mRNA NA coding protein psRNATarget
EZ101895.1
ncRNA:24   UGG--ACUUAAACCAUCUAUAAUUUC   1
  |||--|*|||||||||||*||||||*
targets:32   ACCAUUUAAUUUGGUAGAAAUUAAAU   57

2.5 TSA: Zea mays contig37551, mRNA sequence NA coding protein psRNATarget