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BaseInfo

ncRNA ID novel_zma_miR3060
Species Zea mays
Class miRNA
Genome position Chr8:36896155-36896237 [+]
Reference genome RefGen_v4
Source SRR2089714
Length 23
Mature sequence(if miRNA) 1 - UGUAAUCGGAUCGAAUACGGACA - 23
Stem-loop(if miRNA) --U   A      -     A    -    UAUCAC     C  U
   GUA UCGGAU CGAAU CGGA CAGA      UGGAA CA A
   ||| |||||| ||||| |||| ||||      ||||| ||
   CAU AGCUUA GCUUA GUUU GUUU      ACUUU GU U
AAG   A      A     A    A    ---UAU     U  U
Stem-loop sequence UGUAAUCGGAUCGAAUACGGACAGAUAUCACUGGAACCAUAUUUGUUUUCAUAUUUUGAUUUGAAUUCGAAUUCGAAUACGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ053235.1
ncRNA:23   ACAGGCAUAAGCUAGGCUAAUGU   1
  *|||=||||||||||*|||||||
targets:37   CGUCUGUAUUCGAUCGGAUUACA   59

2.5 TSA: Zea mays contig54356, mRNA sequence NA coding protein psRNATarget