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BaseInfo

ncRNA ID	novel_zma_miR3059
Species	Zea mays
Class	miRNA
Genome position	Chr8:22269963-22270013 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - AUAUUGUAUAUAUAUGUCUGUUGG - 24
Stem-loop(if miRNA)	--     ---            C       AACAG   UAUAUAUAUAGU AUAUA   |||||   |||||||||||| ||||G   UUGUC   AUAUAUAUGUUA UAUGC GG     UGU            -
Stem-loop sequence	AACAGUAUAUAUAUAGUCAUAUAGCGUAUAUUGUAUAUAUAUGUCUGUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008667486.2	ncRNA:24   GGUU---GUCUGUAUAUAUAUGUUAUA   1   *|||---=|||||||||||||=||||* targets:2908   ACAAAUCUAGACAUAUAUAUAUAAUAA   2934 Target Full Sequence	2.5	PREDICTED: Zea mays mannan endo-1,4-beta-mannosidase 3 (LOC103644285), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674063.2	ncRNA:24   GGUUGUCUGUAUAUAUAUGUUAUA   1   =|=*|=|=*||||||||||||||| targets:1943   UCGCCGGGAAUAUAUAUACAAUAU   1966 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (umc2581), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674062.2	ncRNA:24   GGUUGUCUGUAUAUAUAUGUUAUA   1   =|=*|=|=*||||||||||||||| targets:1926   UCGCCGGGAAUAUAUAUACAAUAU   1949 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (umc2581), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001174489.1	ncRNA:24   GGUUGUCUGUAUAUAUAUGUUAUA   1   =|=*|=|=*||||||||||||||| targets:1954   UCGCCGGGAAUAUAUAUACAAUAU   1977 Target Full Sequence	3.0	Zea mays uncharacterized LOC100381676 (LOC100381676), mRNA	NA	coding protein	psRNATarget
BT061955.1	ncRNA:24   GGUUGUCUGUAUAUAUAUGUUAUA   1   =|=*|=|=*||||||||||||||| targets:1954   UCGCCGGGAAUAUAUAUACAAUAU   1977 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0200K12 mRNA, complete cds	NA	coding protein	psRNATarget
BT060999.1	ncRNA:24   GGUUGUCUGUAUAUAUAUGUUAUA   1   =|=*|=|=*||||||||||||||| targets:1891   UCGCCGGGAAUAUAUAUACAAUAU   1914 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0083K06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143438.1	ncRNA:24   GGUUGUCUGUAUAUAUAUGUUAUA   1   =|=*|=|=*||||||||||||||| targets:660   UCGCCGGGAAUAUAUAUACAAUAU   683 Target Full Sequence	3.0	Zea mays hypothetical protein (umc2581), mRNA	NA	coding protein	psRNATarget
BT037864.1	ncRNA:24   GGUUGUCUGUAUAUAUAUGUUAUA   1   =|=*|=|=*||||||||||||||| targets:660   UCGCCGGGAAUAUAUAUACAAUAU   683 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0200A18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675096.2	ncRNA:24   GGUU---GUCUGUAUAUAUAUGUUAUA   1   *=||---=|||=||||||||||||*|| targets:2411   AUAAAUUUAGAUAUAUAUAUACAAAAU   2437 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501283 (LOC100501283), transcript variant X1, mRNA	NA	coding protein	psRNATarget