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BaseInfo

ncRNA ID	novel_zma_miR3058
Species	Zea mays
Class	miRNA
Genome position	Chr6:42808683-42808751 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2287165
Length	24
Mature sequence(if miRNA)	46 - AUAUGUCUCCGUUGCAACACACGG - 69
Stem-loop(if miRNA)	--A  C                      U  CG U    UG GUUGCAACGGGGACAUAUAAUA CA  G A    || |||||||||||||||||||||| ||  |    AC CAACGUUGCCUCUGUAUAUUAU GU  U A GGC  A                      -  AU C
Stem-loop sequence	AUGCGUUGCAACGGGGACAUAUAAUAUCACGGUAACUUAUGUAUUAUAUGUCUCCGUUGCAACACACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240741.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||||||||| targets:7   CCGUGCGUUGCAACGGAGACAUAU   30 Target Full Sequence	1.0	Sequence 6736 from Patent EP2985353	NA	coding protein	psRNATarget
HI408611.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||||||||| targets:7   CCGUGCGUUGCAACGGAGACAUAU   30 Target Full Sequence	1.0	Sequence 6736 from Patent EP2074227	NA	coding protein	psRNATarget
JB169072.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||||||||| targets:7   CCGUGCGUUGCAACGGAGACAUAU   30 Target Full Sequence	1.0	Sequence 6736 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542748.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*||||||||||=||||||| targets:1126   CCGUGCGUUGCAACGGGGACAUAU   1149 Target Full Sequence	2.5	PREDICTED: Zea mays pre-rRNA-processing protein TSR1 homolog (LOC103635667), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*||||||||||=||||||| targets:2204   CCGUGCGUUGCAACGGGGACAUAU   2227 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ091398.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*||||||||||*||||||| targets:34   CCGUGCGUUGCAACGGUGACAUAU   57 Target Full Sequence	2.5	TSA: Zea mays contig27046, mRNA sequence	NA	coding protein	psRNATarget
XM_020552711.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||*|||||| targets:929   CCGUGCGUUGCAACGGAAACAUAU   952 Target Full Sequence	2.5	PREDICTED: Zea mays CRIB domain-containing protein RIC7 (LOC103654132), mRNA	NA	coding protein	psRNATarget
AF162682.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||*|||||| targets:1104   CCGUGCGUUGCAACGGAAACAUAU   1127 Target Full Sequence	2.5	Zea mays mutant sh2-7527 alien mRNA sequence	NA	coding protein	psRNATarget
EU976580.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*||||||||*||||||||| targets:1329   CCGUGCGUUGCAACAGAGACAUAU   1352 Target Full Sequence	2.5	Zea mays clone 984060 zinc transporter 2 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008655083.2	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||*|||||| targets:1388   CCGUGCGUUGCAACGGAAACAUAU   1411 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein TPRXL (LOC103633380), mRNA	NA	coding protein	psRNATarget
NM_001155368.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||*|||||| targets:1434   CCGUGCGUUGCAACGGAAACAUAU   1457 Target Full Sequence	2.5	Zea mays gibberellin receptor GID1L2 (LOC100282458), mRNA	NA	coding protein	psRNATarget
EU960982.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||*|||||| targets:1434   CCGUGCGUUGCAACGGAAACAUAU   1457 Target Full Sequence	2.5	Zea mays clone 230135 gibberellin receptor GID1L2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546475.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*||||||||*||||||||| targets:1245   CCGUGCGUUGCAACAGAGACAUAU   1268 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943445 (LOC109943445), mRNA	NA	coding protein	psRNATarget
NM_001158572.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||*|||||| targets:1632   CCGUGCGUUGCAACGGAAACAUAU   1655 Target Full Sequence	2.5	Zea mays Transcription factor bHLH7 (pco139297), mRNA	NA	coding protein	psRNATarget
EU973411.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   |||||*|||||||||||*|||||| targets:1632   CCGUGCGUUGCAACGGAAACAUAU   1655 Target Full Sequence	2.5	Zea mays clone 398294 BHLH transcription factor mRNA, complete cds	NA	coding protein	psRNATarget
JB163380.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   =||||*|||||||||||*|||||| targets:20   UCGUGCGUUGCAACGGAAACAUAU   43 Target Full Sequence	2.5	Sequence 1044 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235049.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   =||||*|||||||||||*|||||| targets:20   UCGUGCGUUGCAACGGAAACAUAU   43 Target Full Sequence	2.5	Sequence 1044 from Patent EP2985353	NA	coding protein	psRNATarget
HI402919.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   =||||*|||||||||||*|||||| targets:20   UCGUGCGUUGCAACGGAAACAUAU   43 Target Full Sequence	2.5	Sequence 1044 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001147764.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   ||||**|||||||||||*|||||| targets:987   CCGUACGUUGCAACGGAAACAUAU   1010 Target Full Sequence	2.5	Zea mays Ribosomal protein L13 family protein (pco101615), mRNA	NA	coding protein	psRNATarget
BT040800.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   ||||**|||||||||||*|||||| targets:987   CCGUACGUUGCAACGGAAACAUAU   1010 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0129O03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676484.2	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   ||||**|||||||||*|||||||| targets:1023   CCGUACGUUGCAACGAAGACAUAU   1046 Target Full Sequence	2.5	PREDICTED: Zea mays sialyltransferase-like protein 4 (LOC103650896), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY105351.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   ||||**|||||||||||*|||||| targets:997   CCGUACGUUGCAACGGAAACAUAU   1020 Target Full Sequence	2.5	Zea mays PCO101615 mRNA sequence	NA	coding protein	psRNATarget
XM_008676486.2	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   ||||**|||||||||*|||||||| targets:1046   CCGUACGUUGCAACGAAGACAUAU   1069 Target Full Sequence	2.5	PREDICTED: Zea mays sialyltransferase-like protein 4 (LOC103650896), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU951734.1	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   ||||**|||||||||||*|||||| targets:1297   CCGUACGUUGCAACGGAAACAUAU   1320 Target Full Sequence	2.5	Zea mays clone 995709 mRNA sequence	NA	coding protein	psRNATarget
XM_008656346.2	ncRNA:24   GGCACACAACGUUGCCUCUGUAUA   1   ||||**|||||||||||*|||||| targets:1566   CCGUACGUUGCAACGGAAACAUAU   1589 Target Full Sequence	2.5	PREDICTED: Zea mays Ribosomal protein L13 family protein (pco101615), transcript variant X1, mRNA	NA	coding protein	psRNATarget