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BaseInfo

ncRNA ID novel_zma_miR3056
Species Zea mays
Class miRNA
Genome position Chr8:78010504-78010634 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR2287162
Length 24
Mature sequence(if miRNA) 108 - AGGCCUGUUUGGUUUGAUGGCUAA - 131
Stem-loop(if miRNA) ----A   C           A       -CU                ACUUUUCUGCCUA         C   A
     GGC UGUUUGGUUUG UGGCUAA   UGCCACACUUUGCCUA             AGGUUAGUU UUC A
     ||| ||||||||||| |||||||   ||||||||||||||||             ||||||||| ||| U
     CCG ACAAACCAAGC ACCGAUU   ACGGUGUGAAACGGAU             UCCAAUCAG AAG U
AUUCC   -           -       UAC                -------------         C   C
Stem-loop sequence AGGCCUGUUUGGUUUGAUGGCUAACUUGCCACACUUUGCCUAACUUUUCUGCCUAAGGUUAGUUCUUCAAUUCGAACGACUAACCUUAGGCAAAGUGUGGCACAUUUAGCCACGAACCAAACAGCCCCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ091125.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCG-GA   1
  ||||=|||||||||||||||||-||
targets:58   UUAGUCAUCAAACCAAACAGGCUCU   82

3.0 TSA: Zea mays contig26772, mRNA sequence NA coding protein psRNATarget
EU943361.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCG-GA   1
  ||||=|||||||||||||||||-||
targets:242   UUAGUCAUCAAACCAAACAGGCUCU   266

3.0 Zea mays clone 1614023 mRNA sequence NA coding protein psRNATarget
XM_008681615.2
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||=|||||||||||||||*||*
targets:1778   UUAGUCAUCAAACCAAACAGACCC   1801

2.5 PREDICTED: Zea mays cytokinin dehydrogenase 7 (LOC103654801), mRNA NA coding protein psRNATarget
XM_020541969.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||=|||||||||||||||*||*
targets:1256   UUAGUCAUCAAACCAAACAGACCC   1279

2.5 PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA NA coding protein psRNATarget
JB163897.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|||||||||||||||*
targets:106   UUAGGCAGCAAACCAAACAGGCCC   129

2.0 Sequence 1561 from Patent EP2559767 NA coding protein psRNATarget
HI403195.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||||||*|||||||||||*
targets:106   UUAGGCAUCAAUCCAAACAGGCCC   129

2.5 Sequence 1320 from Patent EP2074227 NA coding protein psRNATarget
LQ235325.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||||||*|||||||||||*
targets:106   UUAGGCAUCAAUCCAAACAGGCCC   129

2.5 Sequence 1320 from Patent EP2985353 NA coding protein psRNATarget
HI403436.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|||||||||||||||*
targets:106   UUAGGCAGCAAACCAAACAGGCCC   129

2.0 Sequence 1561 from Patent EP2074227 NA coding protein psRNATarget
JB163838.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|||||||||||||||*
targets:106   UUAGGCAGCAAACCAAACAGGCCC   129

2.0 Sequence 1502 from Patent EP2559767 NA coding protein psRNATarget
LQ235566.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|||||||||||||||*
targets:106   UUAGGCAGCAAACCAAACAGGCCC   129

2.0 Sequence 1561 from Patent EP2985353 NA coding protein psRNATarget
HI403377.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|||||||||||||||*
targets:106   UUAGGCAGCAAACCAAACAGGCCC   129

2.0 Sequence 1502 from Patent EP2074227 NA coding protein psRNATarget
JB163656.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||||||*|||||||||||*
targets:106   UUAGGCAUCAAUCCAAACAGGCCC   129

2.5 Sequence 1320 from Patent EP2559767 NA coding protein psRNATarget
LQ235507.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|||||||||||||||*
targets:106   UUAGGCAGCAAACCAAACAGGCCC   129

2.0 Sequence 1502 from Patent EP2985353 NA coding protein psRNATarget
BT037664.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||||||||||||||*|||*
targets:1333   UUAGACAUCAAACCAAACAAGCCC   1356

2.5 Zea mays full-length cDNA clone ZM_BFb0186J07 mRNA, complete cds NA coding protein psRNATarget
NM_001154039.2
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||||||||||||||*|||*
targets:2080   UUAGACAUCAAACCAAACAAGCCC   2103

2.5 Zea mays Na+/H+ antiporter, probable CP0838 (IDP767), mRNA NA coding protein psRNATarget
EU955653.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||||||||||||||*|||*
targets:2081   UUAGACAUCAAACCAAACAAGCCC   2104

2.5 Zea mays clone 1541098 Na+/H+ antiporter, probable CP0838 mRNA, complete cds NA coding protein psRNATarget
BT068192.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*=|*|=||||||||||||||
targets:1197   UUAGAUAACGAACCAAACAGGCCU   1220

3.0 Zea mays full-length cDNA clone ZM_BFb0086C23 mRNA, complete cds NA coding protein psRNATarget
HI403297.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|=|||||||||||||*
targets:106   UUAGGCAGCGAACCAAACAGGCCC   129

3.0 Sequence 1422 from Patent EP2074227 NA coding protein psRNATarget
LQ235427.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|=|||||||||||||*
targets:106   UUAGGCAGCGAACCAAACAGGCCC   129

3.0 Sequence 1422 from Patent EP2985353 NA coding protein psRNATarget
JB163758.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  ||||*||*|=|||||||||||||*
targets:106   UUAGGCAGCGAACCAAACAGGCCC   129

3.0 Sequence 1422 from Patent EP2559767 NA coding protein psRNATarget
EU967316.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  |||**|||||||||||||||||=*
targets:584   UUAUGCAUCAAACCAAACAGGCUG   607

2.5 Zea mays clone 301383 diphthamide biosynthesis protein 3 mRNA, complete cds NA coding protein psRNATarget
NM_001328519.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  |||**||*|||||||||=||||||
targets:522   UUAUGCAGCAAACCAAAUAGGCCU   545

2.5 Zea mays hypothetical protein (pco113764), mRNA NA coding protein psRNATarget
EU959044.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  |||**||*|||||||||=||||||
targets:509   UUAUGCAGCAAACCAAAUAGGCCU   532

2.5 Zea mays clone 209607 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020541995.1
ncRNA:24   AAUCGGUAGUUUGGUUUGUCCGGA   1
  |||**||*|||||||||=||||||
targets:523   UUAUGCAGCAAACCAAAUAGGCCU   546

2.5 PREDICTED: Zea mays hypothetical protein (pco113764), transcript variant X1, mRNA NA coding protein psRNATarget
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