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BaseInfo

ncRNA ID	novel_zma_miR3055
Species	Zea mays
Class	miRNA
Genome position	Chr6:41342725-41342869 [+]
Reference genome	RefGen_v4
Source	SRR1583944;SRR2638137;SRR2647221;SRR2647385;SRR2647387;SRR2647388;SRR2647389;SRR2647391;SRR1583942;SRR1583943
Length	24
Mature sequence(if miRNA)	1 - AUUAGAUCUAUACCAUUAAAAGAU - 24
Stem-loop(if miRNA)	--A      C                 CAA     A   A        --GG   A   --AU   AUUGACUC    UUAGAU UAUACCAUUAAAAGAUC   ACUUU GAU UAUAUCAU    AUC CAC    GUC        A    |||||| |||||||||||||||||   ||||| ||| ||||||||    ||| |||    |||        U    AAUCUA GUAUGGUAAUUUUCUAG   UGAAA CUA GUAUGGUA    UAG GUG    UAU        G UUA      A                 UGG     C   G        AUGA   A   AAUA   AUCCAGGU
Stem-loop sequence	AUUAGAUCUAUACCAUUAAAAGAUCCAAACUUUAGAUAUAUAUCAUGGAUCACACAUGUCAUUGACUCAUGUGGACCUAUAUAUAAGUGAGAUAGUAAUGGUAUGGAUCCAAAGUGGUGAUCUUUUAAUGGUAUGAAUCUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU953190.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   |||||||||||||||||||=|||| targets:2239   AUCUUUUAAUGGUAUAGAUUUAAU   2262 Target Full Sequence	1.5	Zea mays clone 1389793 protein binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153587.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   |||||||||||||||||||=|||| targets:2239   AUCUUUUAAUGGUAUAGAUUUAAU   2262 Target Full Sequence	1.5	Zea mays protein binding protein (LOC100280668), mRNA	NA	coding protein	psRNATarget
EU943177.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   |||||||||||||||=|||||||* targets:1014   AUCUUUUAAUGGUAUGGAUCUAAA   1037 Target Full Sequence	2.5	Zea mays clone 1578012 mRNA sequence	NA	coding protein	psRNATarget
XM_020542014.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:18   AUCUUUUAAUGGUAUAGAUCCAAU   41 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656647.2	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:601   AUCUUUUAAUGGUAUAGAUCCAAU   624 Target Full Sequence	1.5	PREDICTED: Zea mays Jasmonic acid-amido synthetase JAR1 (pco121700), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008663819.2	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:2643   AUCUUUUAAUGGUAUAGAUCCAAU   2666 Target Full Sequence	1.5	PREDICTED: Zea mays Chaperone DnaJ-domain superfamily protein (LOC103640598), mRNA	NA	coding protein	psRNATarget
EU957674.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:1560   AUCUUUUAAUGGUAUAGAUCCAAU   1583 Target Full Sequence	1.5	Zea mays clone 1602824 mRNA sequence	NA	coding protein	psRNATarget
BT018806.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:1091   AUCUUUUAAUGGUAUAGAUCCAAU   1114 Target Full Sequence	1.5	Zea mays clone EL01N0529G07.d mRNA sequence	NA	coding protein	psRNATarget
XM_008677619.2	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:1537   AUCUUUUAAUGGUAUAGAUCCAAU   1560 Target Full Sequence	1.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677625.2	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:1531   AUCUUUUAAUGGUAUAGAUCCAAU   1554 Target Full Sequence	1.5	PREDICTED: Zea mays Mitochondrial substrate carrier family protein (si606074b10b), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001177092.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:846   AUCUUUUAAUGGUAUAGAUCCAAU   869 Target Full Sequence	1.5	Zea mays AUX/IAA transcription factor (AUX17), mRNA	NA	coding protein	psRNATarget
BT083711.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:846   AUCUUUUAAUGGUAUAGAUCCAAU   869 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0030O20 mRNA, complete cds	NA	coding protein	psRNATarget
BT070082.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:873   AUCUUUUAAUGGUAUAGAUCCAAU   896 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0008K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT061333.2	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:148   AUCUUUUAAUGGUAUAGAUCCAAU   171 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0136G21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656158.2	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:52   AUCUUUUAAUGGUAUAGAUCCAAU   75 Target Full Sequence	1.5	PREDICTED: Zea mays cell number regulator 5 (CNR05), transcript variant X8, mRNA	NA	coding protein	psRNATarget
BT070046.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:1147   AUCUUUUAAUGGUAUAGAUCCAAU   1170 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0376P08 mRNA, complete cds	NA	coding protein	psRNATarget
AY103623.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:733   AUCUUUUAAUGGUAUAGAUCCAAU   756 Target Full Sequence	1.5	Zea mays PCO141453 mRNA sequence	NA	coding protein	psRNATarget
EU966308.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:705   AUCUUUUAAUGGUAUAGAUCCAAU   728 Target Full Sequence	1.5	Zea mays clone 293420 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150698.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:705   AUCUUUUAAUGGUAUAGAUCCAAU   728 Target Full Sequence	1.5	Zea mays hypothetical protein (pco141453a), mRNA	NA	coding protein	psRNATarget
EU952279.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:726   AUCUUUUAAUGGUAUAGAUCCAAU   749 Target Full Sequence	1.5	Zea mays clone 1275160 mRNA sequence	NA	coding protein	psRNATarget
EU962525.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:704   AUCUUUUAAUGGUAUAGAUCCAAU   727 Target Full Sequence	1.5	Zea mays clone 243450 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU951591.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:449   AUCUUUUAAUGGUAUAGAUCCAAU   472 Target Full Sequence	1.5	Zea mays clone 896699 mRNA sequence	NA	coding protein	psRNATarget
EZ516602.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:15   AUCUUUUAAUGGUAUAGAUCCAAU   38 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL16Contig2.betc, mRNA sequence	NA	coding protein	psRNATarget
EZ105769.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:63   AUCUUUUAAUGGUAUAGAUCCAAU   86 Target Full Sequence	1.5	TSA: Zea mays contig41427, mRNA sequence	NA	coding protein	psRNATarget
EZ516965.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||||||||||||||||||||*||| targets:40   AUCUUUUAAUGGUAUAGAUCCAAU   63 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL359Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EU953865.1	ncRNA:24   UAGAAAAUUACCAUAUCUAGAUUA   1   ||*|||||||||||*||||||||| targets:58   AUAUUUUAAUGGUACAGAUCUAAU   81 Target Full Sequence	1.5	Zea mays clone 1448019 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget