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BaseInfo

ncRNA ID	novel_zma_miR3053
Species	Zea mays
Class	miRNA
Genome position	Chr8:93238924-93239023 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - CUUUUUGUGAGAGGCUGCAAACAU - 24
Stem-loop(if miRNA)	--          C             AG     CA     --   UU  GU   GUUUGCAGUC CUCAUAAAAAGGA  AUAGA  UCACU  UAG  GU  U   |||||||||| |||||||||||||  |||||  |||||  |||  ||   CAAACGUCGG GAGUGUUUUUCCU  UAUCU  AGUGG  GUC  CG  A UA          A             CU     AA     GC   UU  UU
Stem-loop sequence	GUUUGCAGUCCCUCAUAAAAAGGAAGAUAGACAUCACUUAGUUGUGUUAUUGCUUCUGCGGGUGAAAUCUAUUCUCCUUUUUGUGAGAGGCUGCAAACAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968721.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *||||||||||||||||=|||||| targets:929   CUGUUUGCAGCCUCUCAUAAAAAG   952 Target Full Sequence	1.5	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget
HI403058.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *||||||||||||||||||||||* targets:10   CUGUUUGCAGCCUCUCACAAAAAU   33 Target Full Sequence	1.0	Sequence 1183 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235188.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *||||||||||||||||||||||* targets:10   CUGUUUGCAGCCUCUCACAAAAAU   33 Target Full Sequence	1.0	Sequence 1183 from Patent EP2985353	NA	coding protein	psRNATarget
JB163519.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *||||||||||||||||||||||* targets:10   CUGUUUGCAGCCUCUCACAAAAAU   33 Target Full Sequence	1.0	Sequence 1183 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008679788.2	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   ||||||||||=|*||||||||||| targets:479   AUGUUUGCAGUCCCUCACAAAAAG   502 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103652812 (LOC103652812), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163679.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.5	Sequence 1343 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235358.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.5	Sequence 1353 from Patent EP2985353	NA	coding protein	psRNATarget
JB163689.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.5	Sequence 1353 from Patent EP2559767	NA	coding protein	psRNATarget
HI403228.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.5	Sequence 1353 from Patent EP2074227	NA	coding protein	psRNATarget
HI403218.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.5	Sequence 1343 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235348.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:11   CUGUUUGCAGCCCCUCACAAAAAU   34 Target Full Sequence	2.5	Sequence 1343 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008653247.2	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:26   CUGUUUGCAGCCCCUCACAAAAAU   49 Target Full Sequence	2.5	PREDICTED: Zea mays 50S ribosomal protein L18 (LOC103631773), mRNA	NA	coding protein	psRNATarget
XM_020547144.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   *|||||||||||*||||||||||* targets:143   CUGUUUGCAGCCCCUCACAAAAAU   166 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103636662 (LOC103636662), mRNA	NA	coding protein	psRNATarget
X55314.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   **||||||||||*||||||||||| targets:913   UGGUUUGCAGCCCCUCACAAAAAG   936 Target Full Sequence	1.5	Zea mays A2 gene	NA	coding protein	psRNATarget
XM_020545800.1	ncRNA:24   UACAAACGUCGGAGAGUGUUUUUC   1   **||||||||||*||||||||||* targets:871   CCGUUUGCAGCCCCUCACAAAAAU   894 Target Full Sequence	2.5	PREDICTED: Zea mays embryo sac development arrest 6 (LOC103641842), mRNA	NA	coding protein	psRNATarget