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BaseInfo

ncRNA ID novel_zma_miR3049
Species Zea mays
Class miRNA
Genome position Chr6:15448834-15448968 [-]
Reference genome RefGen_v4
Source SRR1583944
Length 24
Mature sequence(if miRNA) 1 - AGCCGACGGGAGUUAUCUAAUUCC - 24
Stem-loop(if miRNA) --     AC               GGC      G  G   A AG   AAA   AG          G C
  AGUUA  UAAUUCCCGUCGGCU   GGCUGG CC ACG G  UUA   UAA  CCCGUCGGCU G G
  |||||  |||||||||||||||   |||||| || ||| |  |||   |||  |||||||||| |
  UUAAU  AUUGAGGGCAGCCGA   UCGAUC GG UGC C  AAU   AUU  GGGUAGCCGG U G
CC     CU               AUU      -  G   C GA   AAA   GA          G C
Stem-loop sequence AGUUAACUAAUUCCCGUCGGCUGGCGGCUGGGCCGACGAGAGUUAAAAUAAAGCCCGUCGGCUGGCGGCUGGGCCGAUGGGAGUUAAAAUAAAGCCCGUGGGCUAGCUUUAAGCCGACGGGAGUUAUCUAAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008682205.1
ncRNA:24   CCUUAAUCUAUUGAGGGCAGCCGA   1
  *|=||||*=||||||||||||||*
targets:2   UGGAUUAUGUAACUCCCGUCGGCC   25

3.0 PREDICTED: Zea mays proline-rich receptor-like protein kinase PERK2 (LOC103655449), mRNA NA coding protein psRNATarget