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BaseInfo

ncRNA ID	novel_zma_miR3047
Species	Zea mays
Class	miRNA
Genome position	Chr8:178707694-178707825 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	109 - UGGGCCUGUUUGGUUUGUGGCUAA - 132
Stem-loop(if miRNA)	--U              UG G   AAAUA              U   GUUAGUCGUUCGAAUUGAA    GGGCCUGUUUGGUU  U GCU     UGCCACACUUUGCC AAG                   U    ||||||||||||||  | |||     |||||||||||||| |||    CCCGGACAAACCAA  G UGG     ACGGUGUGAAACGG UUG                   A AUG              GU A   AGUCA              A   AAAAGACAGAUUCCAAUCA
Stem-loop sequence	UGGGCCUGUUUGGUUUGUGGCUAAAUAUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUAGACAGAAAAGUUAGGCAAAGUGUGGCAACUGAGGUAGUGAACCAAACAGGCCCGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540795.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   ||||||||=||||||||||||||| targets:818   UUAGCCACGAACCAAACAGGCCCA   841 Target Full Sequence	1.0	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   |||||||||||||||||||||||* targets:995   UUAGCCACAAACCAAACAGGCCCU   1018 Target Full Sequence	1.0	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   |||||||||||||||||||||||* targets:1585   UUAGCCACAAACCAAACAGGCCCU   1608 Target Full Sequence	1.0	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   ||||||||||||||||||||||=* targets:943   UUAGCCACAAACCAAACAGGCCUU   966 Target Full Sequence	2.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   ||||||||||||||||||||||=* targets:1427   UUAGCCACAAACCAAACAGGCCUU   1450 Target Full Sequence	2.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   ||||||||=||||||||||||||* targets:2491   UUAGCCACGAACCAAACAGGCCCU   2514 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   ||||||||=||||||||||*|||| targets:85   UUAGCCACGAACCAAACAGCCCCA   108 Target Full Sequence	2.5	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   |||*|||||||||||||||||||* targets:215   UUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	1.0	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   |||*|||||||||||||||||||* targets:215   UUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	1.0	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   ||||||||||||||||||*||||* targets:887   UUAGCCACAAACCAAACAUGCCCU   910 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AAUCGGUGUUUGGUUUGUCCGGGU   1   ||||||||||||||||||*||||* targets:2662   UUAGCCACAAACCAAACAAGCCCU   2685 Target Full Sequence	2.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUCCGGGU   1   ||||*||-||||||||||||||||* targets:106   UUAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	3.0	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUCCGGGU   1   ||||*||-||||||||||||||||* targets:106   UUAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	3.0	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUCCGGGU   1   ||||*||-||||||||||||||||* targets:106   UUAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	3.0	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUCCGGGU   1   ||||*||-||||||||||||||||* targets:106   UUAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	3.0	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUCCGGGU   1   ||||*||-||||||||||||||||* targets:106   UUAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	3.0	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   AAUCGGU-GUUUGGUUUGUCCGGGU   1   ||||*||-||||||||||||||||* targets:106   UUAGGCAGCAAACCAAACAGGCCCU   130 Target Full Sequence	3.0	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget