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BaseInfo

ncRNA ID	novel_zma_miR3046
Species	Zea mays
Class	miRNA
Genome position	Chr6:17780532-17780649 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	1 - AUUUUUUGAAUAAGACGAGUGGUC - 24
Stem-loop(if miRNA)	--                     -----AUAA   GUUAU  -UU   UUUUUUUAUUUGUUUU   CCACUCGUCUUAUUCAAAAAA         UGA     UA   UAG                A   |||||||||||||||||||||         |||     ||   |||                U   GGUGAGCAGAAUAAGUUUUUU         AAU     UC   UCG                C CU                     ACAUUUUAA   -----  AGU   UGUUUGAUGGAAUUCA
Stem-loop sequence	CCACUCGUCUUAUUCAAAAAAAUAAUGAGUUAUUAUUUAGUUUUUUUAUUUGUUUUAUCACUUAAGGUAGUUUGUGCUUGACUUAAAAUUUUACAUUUUUUGAAUAAGACGAGUGGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680325.2	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   |||||||||||||||||||||||* targets:3178   GACCACUCGUCUUAUUCAAAAAAA   3201 Target Full Sequence	1.0	PREDICTED: Zea mays ABC transporter A family member 7-like (LOC103653413), mRNA	NA	coding protein	psRNATarget
EU943186.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   ||=|||||||=||||||||||||| targets:2141   GAUCACUCGUUUUAUUCAAAAAAU   2164 Target Full Sequence	1.0	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
BT036310.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   ||||||||||||||||*||||||| targets:1025   GACCACUCGUCUUAUUAAAAAAAU   1048 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0106J21 mRNA, complete cds	NA	coding protein	psRNATarget
EU969508.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   ||||||||||||||||*||||||| targets:1087   GACCACUCGUCUUAUUAAAAAAAU   1110 Target Full Sequence	1.5	Zea mays clone 331312 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138994.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   ||||||||||||||||*||||||| targets:1087   GACCACUCGUCUUAUUAAAAAAAU   1110 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193922 (pco142961), mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   |*|||||||||||||||||||||| targets:507   GUCCACUCGUCUUAUUCAAAAAAU   530 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540315.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   ||||||||||||||||*||||||| targets:4839   GACCACUCGUCUUAUUAAAAAAAU   4862 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100193922 (pco142961), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403404.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   |||||||=|||||||||||||*|| targets:49   GACCACUUGUCUUAUUCAAAAUAU   72 Target Full Sequence	2.5	Sequence 1529 from Patent EP2074227	NA	coding protein	psRNATarget
JB163865.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   |||||||=|||||||||||||*|| targets:49   GACCACUUGUCUUAUUCAAAAUAU   72 Target Full Sequence	2.5	Sequence 1529 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235534.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   |||||||=|||||||||||||*|| targets:49   GACCACUUGUCUUAUUCAAAAUAU   72 Target Full Sequence	2.5	Sequence 1529 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020544837.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   ||=|||||||||||||*||||||| targets:2990   GAUCACUCGUCUUAUUGAAAAAAU   3013 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103630305 (LOC103630305), mRNA	NA	coding protein	psRNATarget
EZ062731.1	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   *|=||||||||||||||||||*|| targets:7   AAUCACUCGUCUUAUUCAAAAUAU   30 Target Full Sequence	1.5	TSA: Zea mays contig63853, mRNA sequence	NA	coding protein	psRNATarget
XM_020548099.1	ncRNA:24   CUGGU-GAGCAGAAUAAGUUUUUUA   1   |||==-||||||||||||||||||* targets:2635   GACUGGCUCGUCUUAUUCAAAAAAA   2659 Target Full Sequence	3.0	PREDICTED: Zea mays receptor-like serine/threonine-protein kinase SD1-8 (LOC103645885), mRNA	NA	coding protein	psRNATarget
XM_008675383.2	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   *|=|||||||=|||||*||||||| targets:1254   AAUCACUCGUUUUAUUAAAAAAAU   1277 Target Full Sequence	2.5	PREDICTED: Zea mays plant cysteine oxidase 1 (LOC103649652), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675384.2	ncRNA:24   CUGGUGAGCAGAAUAAGUUUUUUA   1   *|=|||||||=|||||*||||||| targets:1255   AAUCACUCGUUUUAUUAAAAAAAU   1278 Target Full Sequence	2.5	PREDICTED: Zea mays plant cysteine oxidase 1 (LOC103649652), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU953370.1	ncRNA:24   CUGGU-GAGCAGAAUAAGUUUUUUA   1   ||=|=-||||*|||||||||||||| targets:1024   GAUCGGCUCGACUUAUUCAAAAAAU   1048 Target Full Sequence	3.0	Zea mays clone 1403854 mRNA sequence	NA	coding protein	psRNATarget
EU951651.1	ncRNA:24   CUGGU-GAGCAGAAUAAGUUUUUUA   1   *|===-||||||||||||||||||* targets:376   AAUUGGCUCGUCUUAUUCAAAAAAA   400 Target Full Sequence	3.0	Zea mays clone 987855 mRNA sequence	NA	coding protein	psRNATarget