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BaseInfo

ncRNA ID novel_zma_miR3044
Species Zea mays
Class miRNA
Genome position Chr8:147724535-147724670 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2287031;SRR2287159
Length 24
Mature sequence(if miRNA) 1 - UAUGGUGGAAGGAUAUGAGGGUAA - 24
Stem-loop(if miRNA) --           GA  U                    AG                         CCC
  UAUGGUGGAAG  UA GAGGGUAAAAUAUCACUUUG  AUUACAAAUAAGCUGAAAUAAGCUA   A
  |||||||||||  || ||||||||||||||||||||  |||||||||||||||||||||||||
  AUACCACCUUC  AU CUCCCAUUUUAUAGUGAAAC  UGAUGUUUAUUCGACUUUAUUCGAU   A
UA           UC  C                    CU                         CAU
Stem-loop sequence UAUGGUGGAAGGAUAUGAGGGUAAAAUAUCACUUUGAGAUUACAAAUAAGCUGAAAUAAGCUACCCAAUACUAGCUUAUUUCAGCUUAUUUGUAGUUCCAAAGUGAUAUUUUACCCUCCUACUCUUCCACCAUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087535.1
ncRNA:24   AAUGGGAGUAUAGGAAGGUGGUAU   1
  |||*||||*|=|||||||||||||
targets:185   UUAGCCUCCUGUCCUUCCACCAUA   208

2.0 Zea mays full-length cDNA clone ZM_BFb0104B17 mRNA, complete cds NA coding protein psRNATarget