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BaseInfo

ncRNA ID	novel_zma_miR3043
Species	Zea mays
Class	miRNA
Genome position	Chr8:145719848-145719949 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - GCUGAGCCUCGGGCGAGUCGAAGG - 24
Stem-loop(if miRNA)	--   G            GUCGA     C   CG    UUGAGGAGACCCUCGG   GCU AGCCUCGGGCGA     AGGUG GCC  UUGC                G   ||| ||||||||||||     ||||| |||  ||||                C   CGG UCGGAGCCCGUU     UCUAU CGG  UGGG                G UU   G            -----     -   -C    UCCUCCUAAGUGCAGA
Stem-loop sequence	GCUGAGCCUCGGGCGAGUCGAAGGUGCGCCCGUUGCUUGAGGAGACCCUCGGGCGAGACGUGAAUCCUCCUGGGUCGGCUAUCUUUGCCCGAGGCUGGGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940901.1	ncRNA:24   GGAAGCUGAGCGGGCUCCGAGUCG   1   |||||||||||||||||||*|||| targets:474   CCUUCGACUCGCCCGAGGCCCAGC   497 Target Full Sequence	1.5	Zea mays clone 1168199 mRNA sequence	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:24   GGAAGCUGAGCGGGCUCCGAGUCG   1   ||*||||||||||||||||*|||= targets:116   CCCUCGACUCGCCCGAGGCCCAGU   139 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget
EU952221.1	ncRNA:24   GGAAGCUGAGCGGGCUCCGAGUCG   1   ||*||||||||||||||||*|||= targets:121   CCCUCGACUCGCCCGAGGCCCAGU   144 Target Full Sequence	2.5	Zea mays clone 1229283 mRNA sequence	NA	coding protein	psRNATarget
EU960680.1	ncRNA:24   GGAAGCUGAGCGGGCUCCGAGUCG   1   |||--|||*||||||||||*|||| targets:467   CCU--GACGCGCCCGAGGCCCAGC   488 Target Full Sequence	2.5	Zea mays clone 227359 mRNA sequence	NA	coding protein	psRNATarget
NM_001111458.1	ncRNA:24   GGAAGCUGAGCGGGCUCCGAGUCG   1   |||--|||*||||||||||*|||| targets:453   CCU--GACGCGCCCGAGGCCCAGC   474 Target Full Sequence	2.5	Zea mays MFP1 attachment factor 1 (maf1), mRNA	NA	coding protein	psRNATarget
AF118114.1	ncRNA:24   GGAAGCUGAGCGGGCUCCGAGUCG   1   |||--|||*||||||||||*|||| targets:453   CCU--GACGCGCCCGAGGCCCAGC   474 Target Full Sequence	2.5	Zea mays MFP1 attachment factor 1 (maf1) mRNA, complete cds	NA	coding protein	psRNATarget