Search result

BaseInfo

ncRNA ID novel_zma_miR3034
Species Zea mays
Class miRNA
Genome position Chr7:47991546-47991610 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR2287161;SRR2287162;SRR2089705
Length 24
Mature sequence(if miRNA) 42 - AUGUAUUGAAGUGGAUUGAGGUGU - 65
Stem-loop(if miRNA) --    A    A        A       U   
  AUGU UUGA GUGGAUUG GGUGUAA UUAA
  |||| |||| |||||||| ||||||| |||A
  UACA AACU CACCUAAC CCACAUU AAUC
UG    C    C        C       U   
Stem-loop sequence AUGUAUUGAAGUGGAUUGAGGUGUAAUUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235163.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  ||||||||||||||||||||||||
targets:62   ACACCUCAAUCCACUUCAAUACAU   85

0.0 Sequence 1158 from Patent EP2985353 NA coding protein psRNATarget
HI403033.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  ||||||||||||||||||||||||
targets:62   ACACCUCAAUCCACUUCAAUACAU   85

0.0 Sequence 1158 from Patent EP2074227 NA coding protein psRNATarget
JB163494.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  ||||||||||||||||||||||||
targets:62   ACACCUCAAUCCACUUCAAUACAU   85

0.0 Sequence 1158 from Patent EP2559767 NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  ||||||||||||||*|||||||||
targets:883   ACACCUCAAUCCACCUCAAUACAU   906

1.5 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
BT085755.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  ||||||||||||||*|||||||||
targets:883   ACACCUCAAUCCACCUCAAUACAU   906

1.5 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
EU941642.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  ||||||||||||||*|||||||||
targets:10   ACACCUCAAUCCACCUCAAUACAU   33

1.5 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
JB163782.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

1.0 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
LQ235450.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

1.0 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

1.0 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
JB163781.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

1.0 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
HI403320.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

1.0 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
HI403321.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||||||||||||
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

1.0 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
HI403376.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
JB163837.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
JB163527.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

2.5 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

2.5 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
HI403075.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
HI403066.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

2.5 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
JB163536.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |||||*||||||||*|||||||||
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
EZ052294.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  ||||=*|||||*||||||||||||
targets:57   ACACUCCAAUCAACUUCAAUACAU   80

2.5 TSA: Zea mays contig53415, mRNA sequence NA coding protein psRNATarget
JB163398.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |=||*||||||||||||||*||||
targets:61   AUACAUCAAUCCACUUCAACACAU   84

1.5 Sequence 1062 from Patent EP2559767 NA coding protein psRNATarget
LQ235067.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |=||*||||||||||||||*||||
targets:61   AUACAUCAAUCCACUUCAACACAU   84

1.5 Sequence 1062 from Patent EP2985353 NA coding protein psRNATarget
HI402937.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  |=||*||||||||||||||*||||
targets:61   AUACAUCAAUCCACUUCAACACAU   84

1.5 Sequence 1062 from Patent EP2074227 NA coding protein psRNATarget
AY112376.1
ncRNA:24   UGUGGAGUUAGGUGAAGUUAUGUA   1
  *||==*||||||||||||||*|||
targets:387   CCAUUCCAAUCCACUUCAAUCCAU   410

2.5 Zea mays CL41055_1 mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.