Search result

BaseInfo

ncRNA ID	osa-miR812n-5p
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:14108082-14108284 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	177 - AAGUGCAGCCAUGAGUUUCCGUGC - 200
Stem-loop(if miRNA)	C                G                 -     UC  C         A        U  U     UU    UUGUUAUUAGAUGAUAAAACAUG  UUAAGUGCAGCCAUGA UUUCCGUGCCCAACUUU AUCGU  GU UUAUUUGAA UUUUUUUA GA UAGUA  UCUA                       A  |||||||||||||||| ||||||||||||||||| |||||  || ||||||||| |||||||| || |||||  ||||  AAUUCACGUCGGUACU AAAGGCACGGGUUGAAA UAGCA  CA AAUAAACUU AAAAAAAU UU GUUAU  UUUU                       A A                A                 C     GA  C         A        U  U     --    GUAUUCAGUGUGUAUUUCAUGAU
Stem-loop sequence	CUUAAGUGCAGCCAUGAGUUUCCGUGCCCAACUUUAUCGUUCGUCUUAUUUGAAAUUUUUUUAUGAUUAGUAUUUCUAUUGUUAUUAGAUGAUAAAACAUGAAUAGUACUUUAUGUGUGACUUAUGUUUUUAUUGUUUUUAAAAAAAAUUCAAAUAACACAGACGAUCAAAGUUGGGCACGGAAAAUCAUGGCUGCACUUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289157.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   ||=|||||||||||||=||||||| targets:169   GCGCGGAAACUCAUGGUUGCACUU   192 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090099P09, full insert sequence	NA	coding protein	psRNATarget
HI403522.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:128   GCACGGAAAAUCAUGGCUGCACUU   151 Target Full Sequence	1.0	Sequence 1647 from Patent EP2074227	NA	coding protein	psRNATarget
JB163983.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:128   GCACGGAAAAUCAUGGCUGCACUU   151 Target Full Sequence	1.0	Sequence 1647 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235652.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:128   GCACGGAAAAUCAUGGCUGCACUU   151 Target Full Sequence	1.0	Sequence 1647 from Patent EP2985353	NA	coding protein	psRNATarget
HI403870.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:184   GCACGGAAAAUCAUGGCUGCACUU   207 Target Full Sequence	1.0	Sequence 1995 from Patent EP2074227	NA	coding protein	psRNATarget
JB164331.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:184   GCACGGAAAAUCAUGGCUGCACUU   207 Target Full Sequence	1.0	Sequence 1995 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236000.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:184   GCACGGAAAAUCAUGGCUGCACUU   207 Target Full Sequence	1.0	Sequence 1995 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236551.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:185   GCACGGAAAAUCAUGGCUGCACUU   208 Target Full Sequence	1.0	Sequence 2546 from Patent EP2985353	NA	coding protein	psRNATarget
HI404421.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:185   GCACGGAAAAUCAUGGCUGCACUU   208 Target Full Sequence	1.0	Sequence 2546 from Patent EP2074227	NA	coding protein	psRNATarget
JB164882.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:185   GCACGGAAAAUCAUGGCUGCACUU   208 Target Full Sequence	1.0	Sequence 2546 from Patent EP2559767	NA	coding protein	psRNATarget
HI404244.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:197   GCACGGAAAAUCAUGGCUGCACUU   220 Target Full Sequence	1.0	Sequence 2369 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236374.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:197   GCACGGAAAAUCAUGGCUGCACUU   220 Target Full Sequence	1.0	Sequence 2369 from Patent EP2985353	NA	coding protein	psRNATarget
JB164705.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*|||||||||||||| targets:197   GCACGGAAAAUCAUGGCUGCACUU   220 Target Full Sequence	1.0	Sequence 2369 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015778445.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||||||||*||||||=||||||| targets:1854   GCACGGAAAAUCAUGGUUGCACUU   1877 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phenolic glucoside malonyltransferase 1 (LOC4337152), mRNA	phenolic glucoside malonyltransferase 1(LOC4337152)	coding protein	psRNATarget
HI403902.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *|||*|||||||=||||||||||| targets:177   ACACAGAAACUCGUGGCUGCACUU   200 Target Full Sequence	1.5	Sequence 2027 from Patent EP2074227	NA	coding protein	psRNATarget
JB164363.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *|||*|||||||=||||||||||| targets:177   ACACAGAAACUCGUGGCUGCACUU   200 Target Full Sequence	1.5	Sequence 2027 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236032.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *|||*|||||||=||||||||||| targets:177   ACACAGAAACUCGUGGCUGCACUU   200 Target Full Sequence	1.5	Sequence 2027 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235710.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *|||*|||||||=||||||||||| targets:178   ACACAGAAACUCGUGGCUGCACUU   201 Target Full Sequence	1.5	Sequence 1705 from Patent EP2985353	NA	coding protein	psRNATarget
HI403580.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *|||*|||||||=||||||||||| targets:178   ACACAGAAACUCGUGGCUGCACUU   201 Target Full Sequence	1.5	Sequence 1705 from Patent EP2074227	NA	coding protein	psRNATarget
JB164041.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *|||*|||||||=||||||||||| targets:178   ACACAGAAACUCGUGGCUGCACUU   201 Target Full Sequence	1.5	Sequence 1705 from Patent EP2559767	NA	coding protein	psRNATarget
AK070409.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   |||*|||||*|||||||||||||| targets:867   GCAGGGAAAAUCAUGGCUGCACUU   890 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023054N07, full insert sequence	NA	coding protein	psRNATarget
AK110633.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *|==|||||**||||||||||||| targets:812   ACGUGGAAAACCAUGGCUGCACUU   835 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-169-C01, full insert sequence	NA	coding protein	psRNATarget
AK066805.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *==||||||**||||||||||||| targets:1523   AUGCGGAAAACCAUGGCUGCACUU   1546 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013078A14, full insert sequence	NA	coding protein	psRNATarget
XM_015770442.1	ncRNA:24   CGUGCCUUUGAGUACCGACGUGAA   1   *==||||||**||||||||||||| targets:1522   AUGCGGAAAACCAUGGCUGCACUU   1545 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 1-aminocyclopropane-1-carboxylate oxidase 1-like (LOC4330873), transcript variant X2, mRNA	1-aminocyclopropane-1-carboxylate oxidase 1-like(LOC4330873)	coding protein	psRNATarget

Reference

1	PMID:21113019 "Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011).