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BaseInfo

ncRNA ID novel_zma_miR3029
Species Zea mays
Class miRNA
Genome position Chr7:150819967-150820110 [-]
Reference genome RefGen_v4
Source SRR2089714;SRR2287159;SRR5451004
Length 22
Mature sequence(if miRNA) 1 - CGGUGUGCACCGGACUGUCCAA - 22
Stem-loop(if miRNA) --    U        UG        U        -AG  -AA  GU ---     AG   A  -    -  C    
  GGAC GUCCGGUG  CACCGGAC GUCCGGUG   CC   CG  C   GGCCG  CCA CG GUCG GC GCGGA
  |||| ||||||||  |||||||| ||||||||   ||   ||  |   |||||  ||| || |||| || ||||A
  CCUG CAGGCCAC  GUGGCCUG CAGGCCAC   GG   GC  G   CCGGU  GGU GC CAGC CG CGUCU
AA    U        GU        U        GGA  AAG  UG CAA     CU   -  A    G  -    
Stem-loop sequence GGACUGUCCGGUGUGCACCGGACUGUCCGGUGAGCCAACGGUCGGCCGAGCCAACGGUCGGCCGCGGAAUCUGCGCGCGACACGUGGUCUGGCCAACGGUCGGAAGGAGGCACCGGACUGUCCGGUGUGCACCGGACUGUCCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT061123.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  *|||||||||||||||||||||
targets:273   CUGGACAGUCCGGUGCACACCG   294

0.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:363   CCGGACAGUCCGGUGCACACCG   384

0.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:22   AACCUGUCAGGCCACGUG-UGGC   1
  **||||||||||||||||-||||
targets:146   CCGGACAGUCCGGUGCACCACCG   168

3.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
HI410048.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:2   CCGGACAGUCCGGUGCACACCG   23

0.0 Sequence 8173 from Patent EP2074227 NA coding protein psRNATarget
HI410048.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:98   CCGGACAUGUCCGGUGCACACCG   120

2.0 Sequence 8173 from Patent EP2074227 NA coding protein psRNATarget
JB170509.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:2   CCGGACAGUCCGGUGCACACCG   23

0.0 Sequence 8173 from Patent EP2559767 NA coding protein psRNATarget
JB170509.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:98   CCGGACAUGUCCGGUGCACACCG   120

2.0 Sequence 8173 from Patent EP2559767 NA coding protein psRNATarget
LQ242178.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:2   CCGGACAGUCCGGUGCACACCG   23

0.0 Sequence 8173 from Patent EP2985353 NA coding protein psRNATarget
LQ242178.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:98   CCGGACAUGUCCGGUGCACACCG   120

2.0 Sequence 8173 from Patent EP2985353 NA coding protein psRNATarget
BT068112.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:590   CCGGACAGUCCGGUGCACACCG   611

0.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:459   CCGGACAUGUCCGGUGCACACCG   481

2.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:732   CCGGACAGUCCGGUGCACACCG   753

0.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:823   CCGGACAGUCCGGUGCACACCG   844

0.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:22   AACCUGUCAGGCCACGUG-UGGC   1
  **||||||||||||||||-||||
targets:594   CCGGACAGUCCGGUGCACCACCG   616

3.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:505   CCGGACAGUCCGGUGCACACCG   526

0.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:726   CCGGACAGUCCGGUGCACACCG   747

0.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:611   CCGGACAUGUCCGGUGCACACCG   633

2.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:22   AACCUGU--CAGGCCACGUGUGGC   1
  **|||||--|||||||||||||||
targets:827   CCGGACACUGUCCGGUGCACACCG   850

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:505   CCGGACAGUCCGGUGCACACCG   526

0.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:726   CCGGACAGUCCGGUGCACACCG   747

0.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:611   CCGGACAUGUCCGGUGCACACCG   633

2.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:22   AACCUGU--CAGGCCACGUGUGGC   1
  **|||||--|||||||||||||||
targets:827   CCGGACACUGUCCGGUGCACACCG   850

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:513   CCGGACAGUCCGGUGCACACCG   534

0.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:704   CCGGACAGUCCGGUGCACACCG   725

0.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:513   CCGGACAGUCCGGUGCACACCG   534

0.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:704   CCGGACAGUCCGGUGCACACCG   725

0.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:493   CCGGACAGUCCGGUGCACACCG   514

0.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:589   CCGGACAGUCCGGUGCACACCG   610

0.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:687   CCGGACAGUCCGGUGCACACCG   708

0.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:493   CCGGACAGUCCGGUGCACACCG   514

0.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:589   CCGGACAGUCCGGUGCACACCG   610

0.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:687   CCGGACAGUCCGGUGCACACCG   708

0.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:340   CCGGACAGUCCGGUGCACACCG   361

0.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:551   CCGGACAGUCCGGUGCACACCG   572

0.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:436   CCGGACAUGUCCGGUGCACACCG   458

2.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:340   CCGGACAGUCCGGUGCACACCG   361

0.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:551   CCGGACAGUCCGGUGCACACCG   572

0.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:436   CCGGACAUGUCCGGUGCACACCG   458

2.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
EU940831.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:188   CCGGACAGUCCGGUGCACACCG   209

0.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:399   CCGGACAGUCCGGUGCACACCG   420

0.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940845.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:1389   CCGGACAGUCCGGUGCACACCG   1410

0.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
EU940845.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:1479   CCGGACAGUCCGGUGCACACCG   1500

0.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:2548   CCGGACAGUCCGGUGCACACCG   2569

0.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:2759   CCGGACAGUCCGGUGCACACCG   2780

0.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:4387   CCGGACAGUCCGGUGCACACCG   4408

0.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||||||||||||||||||
targets:4599   CCGGACAGUCCGGUGCACACCG   4620

0.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:4483   CCGGACAUGUCCGGUGCACACCG   4505

2.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
LQ241238.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||=||||||||=||||||
targets:1   CCGGACGGUCCGGUGUACACCG   22

2.5 Sequence 7233 from Patent EP2985353 NA coding protein psRNATarget
HI409108.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||=||||||||=||||||
targets:1   CCGGACGGUCCGGUGUACACCG   22

2.5 Sequence 7233 from Patent EP2074227 NA coding protein psRNATarget
JB169569.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||=||||||||=||||||
targets:1   CCGGACGGUCCGGUGUACACCG   22

2.5 Sequence 7233 from Patent EP2559767 NA coding protein psRNATarget
JB170309.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:1   CCGGACAUGUCCGGUGCACACCG   23

2.0 Sequence 7973 from Patent EP2559767 NA coding protein psRNATarget
LQ241978.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:1   CCGGACAUGUCCGGUGCACACCG   23

2.0 Sequence 7973 from Patent EP2985353 NA coding protein psRNATarget
HI409848.1
ncRNA:22   AACCUGU-CAGGCCACGUGUGGC   1
  **|||||-|||||||||||||||
targets:1   CCGGACAUGUCCGGUGCACACCG   23

2.0 Sequence 7973 from Patent EP2074227 NA coding protein psRNATarget
JB170574.1
ncRNA:22   AACCUGUCAGGCCACGUG-UGGC   1
  **||||||||||||||||-||||
targets:157   CCGGACAGUCCGGUGCACCACCG   179

3.0 Sequence 8238 from Patent EP2559767 NA coding protein psRNATarget
LQ242243.1
ncRNA:22   AACCUGUCAGGCCACGUG-UGGC   1
  **||||||||||||||||-||||
targets:157   CCGGACAGUCCGGUGCACCACCG   179

3.0 Sequence 8238 from Patent EP2985353 NA coding protein psRNATarget
HI410113.1
ncRNA:22   AACCUGUCAGGCCACGUG-UGGC   1
  **||||||||||||||||-||||
targets:157   CCGGACAGUCCGGUGCACCACCG   179

3.0 Sequence 8238 from Patent EP2074227 NA coding protein psRNATarget
NM_001176621.1
ncRNA:22   AACCUGUCAGGCCACGUG-UGGC   1
  **||||||||||||||||-||||
targets:697   CCGGACAGUCCGGUGCACCACCG   719

3.0 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
BT068871.2
ncRNA:22   AACCUGUCAGGCCACGUG-UGGC   1
  **||||||||||||||||-||||
targets:697   CCGGACAGUCCGGUGCACCACCG   719

3.0 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:22   AACCUGU--CAGGCCACGUGUGGC   1
  **|||||--|||||||||||||||
targets:599   CCGGACACUGUCCGGUGCACACCG   622

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
LQ241830.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:72   CCGGACUGUCCGGUGUACACCG   93

2.5 Sequence 7825 from Patent EP2985353 NA coding protein psRNATarget
HI409700.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:72   CCGGACUGUCCGGUGUACACCG   93

2.5 Sequence 7825 from Patent EP2074227 NA coding protein psRNATarget
JB170161.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:72   CCGGACUGUCCGGUGUACACCG   93

2.5 Sequence 7825 from Patent EP2559767 NA coding protein psRNATarget
BT016820.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*|||||||||||||||
targets:193   CCGGACUGUCCGGUGCACACCG   214

1.0 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
NM_001176828.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:479   CCGGACUGUCCGGUGUACACCG   500

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
NM_001176828.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:603   CCGGACUGUCCGGUGUACACCG   624

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
BT069634.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:479   CCGGACUGUCCGGUGUACACCG   500

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
BT069634.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:603   CCGGACUGUCCGGUGUACACCG   624

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
EU948808.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:408   CCGGACUGUCCGGUGUACACCG   429

2.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
EU948808.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:514   CCGGACUGUCCGGUGUACACCG   535

2.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
BT036301.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:817   CCGGACUGUCCGGUGUACACCG   838

2.5 Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds NA coding protein psRNATarget
NM_001176839.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:1394   CCGGACUGUCCGGUGUACACCG   1415

2.5 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
BT069667.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:1394   CCGGACUGUCCGGUGUACACCG   1415

2.5 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
BT060603.1
ncRNA:22   AACCUGUCAGGCCACGUGUGGC   1
  **||||*||||||||=||||||
targets:1194   CCGGACUGUCCGGUGUACACCG   1215

2.5 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget