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BaseInfo

ncRNA ID novel_zma_miR3027
Species Zea mays
Class miRNA
Genome position Chr7:167435629-167435768 [-]
Reference genome RefGen_v4
Source SRR2089714
Length 24
Mature sequence(if miRNA) 117 - AACCAGAAUGUUUGCAGUCCCUCA - 140
Stem-loop(if miRNA) --     GA           CC      AA              C    G     GUC  -CC G     GU
  AACCA  AUGUUUGCAGU  CUCAUA  AAAGGAGGAUUGAC UUAU UGCAG   CA   A AUAAC  U
  |||||  |||||||||||  ||||||  |||||||||||||| |||| |||||   ||   | |||||
  UUGGU  UAUAAAUGUCG  GAGUGU  UUUUUUUCUAAUUG AGUA AUGUC   GU   U UGUUG  U
AU     --           AA      -G              A    G     GUC  UAU G     AU
Stem-loop sequence AACCAGAAUGUUUGCAGUCCCUCAUAAAAAAGGAGGAUUGACCUUAUGUGCAGGUCCACCAGAUAACGUUUUAGUUGUGUUAUUGCUGCUGUAGAUGAAGUUAAUCUUUUUUUGUGUGAGAAGCUGUAAAUAUUGGUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403422.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:111   UGAGGGGCUGCAAACAGUCUGGUU   134

2.5 Sequence 1547 from Patent EP2074227 NA coding protein psRNATarget
LQ235552.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:111   UGAGGGGCUGCAAACAGUCUGGUU   134

2.5 Sequence 1547 from Patent EP2985353 NA coding protein psRNATarget
JB163883.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:111   UGAGGGGCUGCAAACAGUCUGGUU   134

2.5 Sequence 1547 from Patent EP2559767 NA coding protein psRNATarget
XM_020547635.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:2553   UGAGGGGCUGCAAACACUCUGGUU   2576

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X7, mRNA NA coding protein psRNATarget
AY111544.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:977   UGAGGGGCUGCAAACACUCUGGUU   1000

2.5 Zea mays CL947_1 mRNA sequence NA coding protein psRNATarget
X55314.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:1021   UGAGGGGCUGCAAACACUCUGGUU   1044

2.5 Zea mays A2 gene NA coding protein psRNATarget
XM_020547631.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:3453   UGAGGGGCUGCAAACACUCUGGUU   3476

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547630.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:3470   UGAGGGGCUGCAAACACUCUGGUU   3493

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547634.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:4328   UGAGGGGCUGCAAACACUCUGGUU   4351

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020547633.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:4331   UGAGGGGCUGCAAACACUCUGGUU   4354

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020547632.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:4349   UGAGGGGCUGCAAACACUCUGGUU   4372

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020547629.1
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||||=|||||||||*|||||||
targets:4351   UGAGGGGCUGCAAACACUCUGGUU   4374

2.5 PREDICTED: Zea mays uncharacterized LOC100278220 (LOC100278220), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008657979.2
ncRNA:24   ACUCCCUGACGUUUGUAAGACCAA   1
  ||||*|=|||||||||||=|||||
targets:1483   UGAGAGGCUGCAAACAUUUUGGUU   1506

2.5 PREDICTED: Zea mays annexin-like protein RJ4 (LOC103635552), mRNA NA coding protein psRNATarget
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