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BaseInfo

ncRNA ID	novel_zma_miR3025
Species	Zea mays
Class	miRNA
Genome position	Chr7:169044432-169044525 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	21
Mature sequence(if miRNA)	1 - GUGGAUUGAGGAGGAUUGGAA - 21
Stem-loop(if miRNA)	--          GA        AG                   U  A   GUGGAUUGAG  GGAUUGGA  GGAUUAAAUUCUCUUCUAU CA A   ||||||||||  ||||||||  ||||||||||||||||||| ||   CAUCUAACUC  CCUAAUCU  CUUAAUUUAGGAGAGGAUA GU U UC          UC        CU                   U  U
Stem-loop sequence	GUGGAUUGAGGAGGAUUGGAAGGGAUUAAAUUCUCUUCUAUUCAAAUUUGUAUAGGAGAGGAUUUAAUUCUCUCUAAUCCCUCUCAAUCUACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405903.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:80   AUCCAAUCCUGCUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:80   AUCCAAUCCUGCUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
JB166364.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:80   AUCCAAUCCUGCUCAAUCCAC   100 Target Full Sequence	1.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
EU942657.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:236   AUCCAAUCCUACUCAAUCCAC   256 Target Full Sequence	1.5	Zea mays clone 1527578 mRNA sequence	NA	coding protein	psRNATarget
AY103719.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:879   AUCCAAUCCUGCUCAAUCCAC   899 Target Full Sequence	1.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
EU949831.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:1014   AUCCAAUCCUACUCAAUCCAC   1034 Target Full Sequence	1.5	Zea mays clone 447574 mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *||||||||*||||||||||| targets:3277   CUCCAAUCCCCCUCAAUCCAC   3297 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *||||||||*||||||||||| targets:1598   CUCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *||||||||*||||||||||| targets:1598   CUCCAAUCCCCCUCAAUCCAC   1618 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666493.2	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:3481   AUCCAAUCCUACUCAAUCCAC   3501 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546709.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:3467   AUCCAAUCCUACUCAAUCCAC   3487 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666491.2	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:3749   AUCCAAUCCUACUCAAUCCAC   3769 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666492.2	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *|||||||||*|||||||||| targets:3754   AUCCAAUCCUACUCAAUCCAC   3774 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643333 (LOC103643333), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI408824.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   **=|||||||||||||||||= targets:79   CCUCAAUCCUCCUCAAUCCAU   99 Target Full Sequence	2.0	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   **=|||||||||||||||||= targets:79   CCUCAAUCCUCCUCAAUCCAU   99 Target Full Sequence	2.0	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   **=|||||||||||||||||= targets:79   CCUCAAUCCUCCUCAAUCCAU   99 Target Full Sequence	2.0	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
EU942133.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *||||||*|||=||||||||| targets:197   CUCCAAUACUCUUCAAUCCAC   217 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:21   AAGGUUAGGAGGAGUUAGGUG   1   *||||||*|||=||||||||| targets:187   CUCCAAUACUCUUCAAUCCAC   207 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget