Search result

BaseInfo

ncRNA ID	novel_zma_miR3021
Species	Zea mays
Class	miRNA
Genome position	Chr7:130358409-130358468 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2089715
Length	24
Mature sequence(if miRNA)	1 - GGAUUAGAGGGGAUUGAGGGAGAA - 24
Stem-loop(if miRNA)	-UUA                   UGA GGA    GAGGGGAUUGAGGGAGAAA   A |||    |||||||||||||||||||   C CCU    CUCUCUUAACUUUCUCUUU   U    CUAC                   UUA
Stem-loop sequence	GGAUUAGAGGGGAUUGAGGGAGAAAUGAACUAUUUUUCUCUUUCAAUUCUCUCCAUCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020549567.1	ncRNA:24   AAGA---GGGAGUUAGGGGAGAUUAGG   1   ||||---|||||||||||||||||||| targets:1063   UUCUAGCCCCUCAAUCCCCUCUAAUCC   1089 Target Full Sequence	0.0	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||*|||||||||||||||||||| targets:1797   UUCCCCCUCAAUCCCCUCUAAUCC   1820 Target Full Sequence	0.0	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||||=||||||||||||*||||| targets:1462   UUCUCUCUCAAUCCCCUCCAAUCC   1485 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
HI403235.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||*=||||||||=|||||||||| targets:66   UUCCUCCUCAAUCUCCUCUAAUCC   89 Target Full Sequence	1.5	Sequence 1360 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235365.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||*=||||||||=|||||||||| targets:66   UUCCUCCUCAAUCUCCUCUAAUCC   89 Target Full Sequence	1.5	Sequence 1360 from Patent EP2985353	NA	coding protein	psRNATarget
JB163696.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||*=||||||||=|||||||||| targets:66   UUCCUCCUCAAUCUCCUCUAAUCC   89 Target Full Sequence	1.5	Sequence 1360 from Patent EP2559767	NA	coding protein	psRNATarget
HI403402.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||*=||||||||=|||||||||| targets:66   UUCCUCCUCAAUCUCCUCUAAUCC   89 Target Full Sequence	1.5	Sequence 1527 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235532.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||*=||||||||=|||||||||| targets:66   UUCCUCCUCAAUCUCCUCUAAUCC   89 Target Full Sequence	1.5	Sequence 1527 from Patent EP2985353	NA	coding protein	psRNATarget
JB163863.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||*=||||||||=|||||||||| targets:66   UUCCUCCUCAAUCUCCUCUAAUCC   89 Target Full Sequence	1.5	Sequence 1527 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||||*||||||||||||*||||| targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92 Target Full Sequence	2.5	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||||*||||||||||||*||||| targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92 Target Full Sequence	2.5	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   |||||*||||||||||||*||||| targets:69   UUCUCACUCAAUCCCCUCCAAUCC   92 Target Full Sequence	2.5	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   *|=|||||=|||||||||*||||| targets:76   CUUUCCCUUAAUCCCCUCCAAUCC   99 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU952092.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:464   UUGAGCACCCUCAAUCCCCUCUAAUUC   490 Target Full Sequence	1.5	Zea mays clone 1163776 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545634.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:7602   UUGAGCACCCUCAAUCCCCUCUAAUUC   7628 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020545628.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:7752   UUGAGCACCCUCAAUCCCCUCUAAUUC   7778 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545630.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:7907   UUGAGCACCCUCAAUCCCCUCUAAUUC   7933 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020545629.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:7907   UUGAGCACCCUCAAUCCCCUCUAAUUC   7933 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020545631.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:7872   UUGAGCACCCUCAAUCCCCUCUAAUUC   7898 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020545626.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:7907   UUGAGCACCCUCAAUCCCCUCUAAUUC   7933 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545633.1	ncRNA:24   AA---GAGGGAGUUAGGGGAGAUUAGG   1   ||---|*||||||||||||||||||=| targets:7899   UUGAGCACCCUCAAUCCCCUCUAAUUC   7925 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X9, mRNA	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   *||*||||||||||||||*||||| targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   *||*||||||||||||||*||||| targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   *||*||||||||||||||*||||| targets:31   AUCCCCCUCAAUCCCCUCCAAUCC   54 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001154659.2	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   **|||*||=||||||||||||||| targets:2123   AACUCACUUAAUCCCCUCUAAUCC   2146 Target Full Sequence	2.0	Zea mays transport inhibitor response 1 protein (LOC100281739), mRNA	NA	coding protein	psRNATarget
EU957719.1	ncRNA:24   AAGAGGGAGUUAGGGGAGAUUAGG   1   **|||*||=||||||||||||||| targets:2124   AACUCACUUAAUCCCCUCUAAUCC   2147 Target Full Sequence	2.0	Zea mays clone 1612818 transport inhibitor response 1 protein mRNA, complete cds	NA	coding protein	psRNATarget