| ncRNA ID | osa-miR5503 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr8:10797422-10797677 [-] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 22 |
| Mature sequence(if miRNA) | 11 - UUCGGAUCUUUCUAGAGGCAUU - 32 |
| Stem-loop(if miRNA) |
UUU AGACCUC C UC ---------------CCAAC UUACUAUUAGCCAUACAGUUUUGCAAACUGAUUCUGAUUCUUCUAAGGAUCUGAUUCACGGAGAAUCCUUUGGAUUUC UGCU CCUC UA AGGAUCUGAAG CUA C |||| |||| || ||||||||||| ||| ACGG GGAG AU UUCUAGGCUUC GUA U GUC GGUUUAC - CU AUUAAACUCCACAUUAACAU UGUACAUUUCUCAAGUUUACGCUUCUACCAUAUUAUUAUGCGAUACUGUUGUUACGUCUCCAAUAGUAACUAGUUUUU |
| Stem-loop sequence | UUUUGCUAGACCUCCCUCCUAUCAGGAUCUGAAGCCAACCUAUUACUAUUAGCCAUACAGUUUUGCAAACUGAUUCUGAUUCUUCUAAGGAUCUGAUUCACGGAGAAUCCUUUGGAUUUCCUUUUUUGAUCAAUGAUAACCUCUGCAUUGUUGUCAUAGCGUAUUAUUAUACCAUCUUCGCAUUUGAACUCUUUACAUGUAUGUACAAUUACACCUCAAAUUACUUCGGAUCUUUCUAGAGGCAUUUGGGGCACUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK063122.1 |
|
0.0 | Oryza sativa Japonica Group cDNA clone:001-111-E09, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK071967.1 |
|
0.0 | Oryza sativa Japonica Group cDNA clone:J013084G06, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK105308.1 |
|
0.0 | Oryza sativa Japonica Group cDNA clone:001-117-B12, full insert sequence | NA | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |