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BaseInfo

ncRNA ID novel_zma_miR3019
Species Zea mays
Class miRNA
Genome position Chr6:110215314-110215393 [+]
Reference genome RefGen_v4
Source SRR2089714;SRR2287162;SRR2287164;SRR2287165
Length 20
Mature sequence(if miRNA) 1 - GGAGGGGAUUGAGGGGCAUA - 20
Stem-loop(if miRNA) --    G              A      G      -   A
  GGAG GGAUUGAGGGGCAU UAAUCC UUGCUA UUA A
  |||| |||||||||||||| |||||| |||||| ||| A
  UCUU CUUAACUCCCUGUA GUUAGG AAUGAU AAU A
AA    A              C      A      C   A
Stem-loop sequence GGAGGGGAUUGAGGGGCAUAUAAUCCGUUGCUAUUAAAAAAUAACUAGUAAAGGAUUGCAUGUCCCUCAAUUCAUUCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163954.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*||||||||||||||||
targets:30   CAUCCCCCUCAAUCCCCUCC   49

1.0 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235623.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*||||||||||||||||
targets:30   CAUCCCCCUCAAUCCCCUCC   49

1.0 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
HI403493.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*||||||||||||||||
targets:30   CAUCCCCCUCAAUCCCCUCC   49

1.0 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
XM_020547043.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*||||||||||||||||
targets:3173   GAUCCCCCUCAAUCCCCUCC   3192

1.0 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA NA coding protein psRNATarget
HI403355.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*|=||||||||||||||
targets:28   CAUUCUCCUCAAUCCCCUCC   47

2.0 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
JB163816.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*|=||||||||||||||
targets:28   CAUUCUCCUCAAUCCCCUCC   47

2.0 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
LQ235485.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*|=||||||||||||||
targets:28   CAUUCUCCUCAAUCCCCUCC   47

2.0 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
EU973567.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:83   UUUCCCCCUCAAUCCCCUCC   102

2.0 Zea mays clone 401029 mRNA sequence NA coding protein psRNATarget
XM_020551688.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2148   UUUCCCCCUCAAUCCCCUCC   2167

2.0 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008661692.2
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA NA coding protein psRNATarget
XM_008661691.2
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA NA coding protein psRNATarget
XM_008661689.2
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020544136.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020544139.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA NA coding protein psRNATarget
XM_020544133.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020544131.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020544137.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA NA coding protein psRNATarget
XM_020544135.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020544134.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA NA coding protein psRNATarget
XM_020544132.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020544126.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544125.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020544130.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020544127.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020544129.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*||||||||||||||||
targets:2260   UUUCCCCCUCAAUCCCCUCC   2279

2.0 PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020546477.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  ||**||||||||||||||||
targets:8   UAGCCCCCUCAAUCCCCUCC   27

2.0 PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA NA coding protein psRNATarget
BT017317.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  ****||||||||||||||||
targets:66   GCCCCCCCUCAAUCCCCUCC   85

3.0 Zea mays clone EL01N0318H03.c mRNA sequence NA coding protein psRNATarget
NM_001349063.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*=|=|||||||||||||
targets:1642   AAUUUCUCUCAAUCCCCUCC   1661

3.0 Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA NA coding protein psRNATarget
BT064254.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*=|=|||||||||||||
targets:1642   AAUUUCUCUCAAUCCCCUCC   1661

3.0 Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds NA coding protein psRNATarget
BT067571.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*=|=|||||||||||||
targets:1629   AAUUUCUCUCAAUCCCCUCC   1648

3.0 Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds NA coding protein psRNATarget
XM_008649902.2
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  *||*=|=|||||||||||||
targets:1672   AAUUUCUCUCAAUCCCCUCC   1691

3.0 PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543595.1
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*=|||||||||||||||
targets:1515   UUUCUCCCUCAAUCCCCUCC   1534

3.0 PREDICTED: Zea mays uncharacterized LOC109942132 (LOC109942132), mRNA NA coding protein psRNATarget
XM_008649581.2
ncRNA:20   AUACGGGGAGUUAGGGGAGG   1
  |*|*|||||||||||||||=
targets:1796   UUUCCCCCUCAAUCCCCUCU   1815

3.0 PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA NA coding protein psRNATarget
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