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BaseInfo

ncRNA ID	novel_zma_miR3017
Species	Zea mays
Class	miRNA
Genome position	Chr10:116507169-116507366 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	175 - CGGUGAAUUUUAGUGGAGUGGCUC - 198
Stem-loop(if miRNA)	--  UG         --C         A        GUG        A        --CAU  U  CUUU    ACU  C  U      --U       A     U   GU  CUCCAUUGG   UCACCGGAC GUCCGGUG   CACCGGAC GUCCGGUG     UC GA    GCAG   GG UC AAUUUC   GACGGUC GACUG A   ||  |||||||||   ||||||||| ||||||||   |||||||| ||||||||     || ||    ||||   || || ||||||   ||||||| ||||| C   CG  GAGGUGAUU   AGUGGCUUG CAGGUCAC   GUGGUCUG CAGGCCAC     AG CU    CGUU   CC AG UUGAAG   UUGCCAG CUGAC U CU  GU         UUA         A        GUG        A        UCGCU  C  ----    --G  -  -      CAG       -     G
Stem-loop sequence	GUUGCUCCAUUGGCUCACCGGACAGUCCGGUGGUGCACCGGACAGUCCGGUGCAUUCUGACUUUGCAGACUGGCUCUAAUUUCUGACGGUCAGACUGUACUGCAGUCGACCGUUGACGAAGUUGACCGUUGCUCCGAUCGCUCACCGGACAGUCUGGUGGUGCACUGGACAGUUCGGUGAAUUUUAGUGGAGUGGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064671.1	ncRNA:24   CUCGGUGAGGUGAUUUUAAGUGGC   1   ||||||||||=|||*||||||||| targets:1072   GAGCCACUCCGCUAUAAUUCACCG   1095 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds	NA	coding protein	psRNATarget
EU947420.1	ncRNA:24   CUCGGUGAGGUGAUUUUAAGUGGC   1   |||=||||||=|||*||||||||| targets:311   GAGUCACUCCGCUAUAAUUCACCG   334 Target Full Sequence	2.5	Zea mays clone 342805 mRNA sequence	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   CUCGGUGAGGUGAUUUUAAGUGGC   1   |||*||||||=|||*||||||||| targets:582   GAGGCACUCCGCUAUAAUUCACCG   605 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   CUCGGUGAGGUGAUUUUAAGUGGC   1   |||*||||||=|||*||||||||| targets:582   GAGGCACUCCGCUAUAAUUCACCG   605 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
BT064593.1	ncRNA:24   CUCGGUGAGG---UGAUUUUAAGUGGC   1   *|||-|||||---|||||||||||||| targets:625   AAGC-ACUCCUCGACUAAAAUUCACCG   650 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0188B15 mRNA, complete cds	NA	coding protein	psRNATarget
BT063396.1	ncRNA:24   CUCGGUGAGG---UGAUUUUAAGUGGC   1   *|||-|||||---|||||||||||||| targets:2584   AAGC-ACUCCUCGACUAAAAUUCACCG   2609 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0059P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU948808.1	ncRNA:24   CUCGGUGAGGUGAUUUUAAGUGGC   1   *=||=|*|||||||*||||||||| targets:493   CGGCUAGUCCACUAUAAUUCACCG   516 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget