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BaseInfo

ncRNA ID novel_zma_miR3013
Species Zea mays
Class miRNA
Genome position Chr6:73559335-73559436 [+]
Reference genome RefGen_v4
Source SRR2089714
Length 24
Mature sequence(if miRNA) 1 - GCUCCACGCGGAUCGUCCGGUGAA - 24
Stem-loop(if miRNA) --   --    G     C        AAU     -A  -A    -  -A      C
  GCU  CCAC CGGAU GUCCGGUG   UAUAG  CG  UGAA GU  UGUUUU C
  |||  |||| ||||| ||||||||   |||||  ||  |||| ||  ||||||
  CGG  GGUG GUCUG CAGGCUAC   GUAUC  GU  ACUU CA  ACAAGA C
CA   UG    -     U        ---     GG  AG    U  CG      G
Stem-loop sequence GCUCCACGCGGAUCGUCCGGUGAAUUAUAGACGAUGAAGUAUGUUUUCCCGAGAACAGCACUUUCAGAUGGGCUAUGCAUCGGACUGUCUGGUGGGUGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001196965.1
ncRNA:24   AAGUGGCCUGCUAGGCGCACCUCG   1
  **||||||=*|||||||||||||=
targets:1459   CGCACCGGGAGAUCCGCGUGGAGU   1482

3.0 Zea mays U-box domain-containing protein 44 (LOC100502487), mRNA NA coding protein psRNATarget
BT088331.1
ncRNA:24   AAGUGGCCUGCUAGGCGCACCUCG   1
  **||||||=*|||||||||||||=
targets:1459   CGCACCGGGAGAUCCGCGUGGAGU   1482

3.0 Zea mays full-length cDNA clone ZM_BFc0143H07 mRNA, complete cds NA coding protein psRNATarget