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BaseInfo

ncRNA ID	novel_zma_miR3012
Species	Zea mays
Class	miRNA
Genome position	Chr6:56914059-56914140 [+]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2089715
Length	21
Mature sequence(if miRNA)	1 - UUUGGGAGCCAGAAAAUCGGA - 21
Stem-loop(if miRNA)	--                 CG     G             A   UUUGGGAGCCAGAAAAU  GAGGG AUUGGAGGGGCUA A   |||||||||||||||||  ||||| ||||||||||||| A   AAACCCUCGGUUUUUUG  CUCCC UAACCUCCCCGAU C UC                 AA     -             U
Stem-loop sequence	UUUGGGAGCCAGAAAAUCGGAGGGGAUUGGAGGGGCUAAAACUUAGCCCCUCCAAUCCCUCAAGUUUUUUGGCUCCCAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU944975.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=|||||||||||||||| targets:824   UCCGGUUUUCUGGCUCCCAAA   844 Target Full Sequence	1.0	Zea mays clone 236700 mRNA sequence	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=|||||||||||||||| targets:2101   UCCGGUUUUCUGGCUCCCAAA   2121 Target Full Sequence	1.0	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
EU959921.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||=||||||||||||||=||| targets:809   UCUGAUUUUCUGGCUCCUAAA   829 Target Full Sequence	2.5	Zea mays clone 220633 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149961.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||=||||||||||||||=||| targets:809   UCUGAUUUUCUGGCUCCUAAA   829 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276083 (LOC100276083), mRNA	NA	coding protein	psRNATarget
NM_001175145.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   |||||||||||||||||||*| targets:1529   UCCGAUUUUCUGGCUCCCACA   1549 Target Full Sequence	1.5	Zea mays putative MATE efflux family protein (LOC100382400), mRNA	NA	coding protein	psRNATarget
BT064167.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   |||||||||||||||||||*| targets:1529   UCCGAUUUUCUGGCUCCCACA   1549 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0143P12 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238344.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:31   UCCGGUUUUGUGGCUCCCAAA   51 Target Full Sequence	2.5	Sequence 4339 from Patent EP2985353	NA	coding protein	psRNATarget
JB166675.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:31   UCCGGUUUUGUGGCUCCCAAA   51 Target Full Sequence	2.5	Sequence 4339 from Patent EP2559767	NA	coding protein	psRNATarget
HI406214.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:31   UCCGGUUUUGUGGCUCCCAAA   51 Target Full Sequence	2.5	Sequence 4339 from Patent EP2074227	NA	coding protein	psRNATarget
EZ066710.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:77   UCCGGUUUUAUGGCUCCCAAA   97 Target Full Sequence	2.5	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
BT065189.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:950   UCCGGUUUUAUGGCUCCCAAA   970 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
EU965698.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:1071   UCCGGUUUUAUGGCUCCCAAA   1091 Target Full Sequence	2.5	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:1071   UCCGGUUUUAUGGCUCCCAAA   1091 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:1278   UCCGGUUUUAUGGCUCCCAAA   1298 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU973262.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||=||||||||||||||||*| targets:1596   UCUGAUUUUCUGGCUCCCACA   1616 Target Full Sequence	2.5	Zea mays clone 395708 mRNA sequence	NA	coding protein	psRNATarget
XM_008677028.2	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:2448   UCCGGUUUUGUGGCUCCCAAA   2468 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550525.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||*||||||||||| targets:2466   UCCGGUUUUGUGGCUCCCAAA   2486 Target Full Sequence	2.5	PREDICTED: Zea mays SCP1-like small phosphatase 4b (LOC103651391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   ||||=||||||*||||||||| targets:4144   UCCGGUUUUCUCGCUCCCAAA   4164 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
X70154.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   |=||=||||*||||||||||| targets:273   UUCGGUUUUGUGGCUCCCAAA   293 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152)	NA	coding protein	psRNATarget
NM_001111958.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   |=||=||||*||||||||||| targets:1215   UUCGGUUUUGUGGCUCCCAAA   1235 Target Full Sequence	2.5	Zea mays protein b-32 (O6), mRNA	NA	coding protein	psRNATarget
X54212.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   |=||=||||*||||||||||| targets:1215   UUCGGUUUUGUGGCUCCCAAA   1235 Target Full Sequence	2.5	Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120)	NA	coding protein	psRNATarget
AY109436.1	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   |=||=||||*||||||||||| targets:1215   UUCGGUUUUGUGGCUCCCAAA   1235 Target Full Sequence	2.5	Zea mays CL1124_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008674728.2	ncRNA:21   AGGCUAAAAGACCGAGGGUUU   1   |*||||||||*|||||||||| targets:719   UACGAUUUUCGGGCUCCCAAA   739 Target Full Sequence	1.5	PREDICTED: Zea mays 60S ribosomal protein L18A (LOC100284168), transcript variant X1, mRNA	NA	coding protein	psRNATarget