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BaseInfo

ncRNA ID	novel_zma_miR3010
Species	Zea mays
Class	miRNA
Genome position	Chr6:46866179-46866302 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	101 - AAAUACGAUUUCUAGUGACGGUUU - 124
Stem-loop(if miRNA)	--    C            -       C AG          A        C AC           ACCG CACUAGAAAUCG AUUUCUA A  CGGUUUCUUA GAAAACCG C  UAGAAAUCA   |||| |||||||||||| ||||||| |  |||||||||| |||||||| |  ||||||||U   UGGC GUGAUCUUUAGC UAAAGAU U  GUCAAGGAAU CUUUUGGC G  AUCUUUAGG UU    A            A       C CU          A        A AC
Stem-loop sequence	ACCGCCACUAGAAAUCGAUUUCUACAAGCGGUUUCUUAAGAAAACCGCCACUAGAAAUCAUGGAUUUCUACAGACGGUUUUCAUAAGGAACUGUCUCUAGAAAUACGAUUUCUAGUGACGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405882.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.0	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
JB166343.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.0	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238012.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:38   AAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	1.0	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
HI402986.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.0	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
JB163447.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.0	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||||||||||||||*||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||||||||||||||*||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget
JB163445.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||||||||||||||*||||| targets:16   AAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	1.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:24   UUUGGCAGUGAUCUUUAGCAUAAA   1   ||||||*||||||||||||||||| targets:16   AAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	1.0	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget