Search result

BaseInfo

ncRNA ID	osa-miR1427
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:9192581-9192837 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	186 - UGCGGAACCGUGCGGUGGCGC - 206
Stem-loop(if miRNA)	GCUGCGCGCGACCGCGCCGUCCCGCAGGCCAGCGCCGCGCCACCGCGCGGUUCCGCAGCAGGGACAUGCGCCACCCGUUACAGCCAACUGAAAUCUGCACUGAUUUGAUUACAUGCGCACGUAUA UG                                                                                                                             U ||                                                                                                                             A GC                                                                                                                             U   CAGGGCACCGAACCGACGCGCGCUGACGCGCCAGGGCGUCCGGCCGCGGCGCGGUGGCGUGCCAAGGCGUCGUGCCGGUGCGCGCUGGCUUAGGUCCUUGUCGCGUGUGAGCGACGUACGUGACG
Stem-loop sequence	UGGCUGCGCGCGACCGCGCCGUCCCGCAGGCCAGCGCCGCGCCACCGCGCGGUUCCGCAGCAGGGACAUGCGCCACCCGUUACAGCCAACUGAAAUCUGCACUGAUUUGAUUACAUGCGCACGUAUAUAUGCAGUGCAUGCAGCGAGUGUGCGCUGUUCCUGGAUUCGGUCGCGCGUGGCCGUGCUGCGGAACCGUGCGGUGGCGCGGCGCCGGCCUGCGGGACCGCGCAGUCGCGCGCAGCCAAGCCACGGGACCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015786518.1	ncRNA:21   CGCGGUGGCGUGCCAAGGCGU   1   *|||||||||||||||=|||= targets:399   CCGCCACCGCACGGUUUCGCG   419 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342013 (LOC4342013), mRNA	uncharacterized LOC4342013(LOC4342013)	coding protein	psRNATarget
AK101481.1	ncRNA:21   CGCGGUGGCGUGCCAAGGCGU   1   *|||||||||||||||=|||= targets:251   CCGCCACCGCACGGUUUCGCG   271 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033041C08, full insert sequence	NA	coding protein	psRNATarget
AK063291.1	ncRNA:21   CGCGGUGGCGUGCCAAGGCGU   1   *|||||||||||||||=|||= targets:250   CCGCCACCGCACGGUUUCGCG   270 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-113-E03, full insert sequence	NA	coding protein	psRNATarget
AK107668.1	ncRNA:21   CGCGGUGGCGUGCCAAGGCGU   1   **|||||||||||||||=||| targets:828   CGGCCACCGCACGGUUCUGCA   848 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-131-H05, full insert sequence	NA	coding protein	psRNATarget
XM_015787078.1	ncRNA:21   CGCGGUGGCGUGCCAAGGCGU   1   ||||||**||||||||||||* targets:947   GCGCCAAGGCACGGUUCCGCC   967 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group 3-ketoacyl-CoA synthase 6 (LOC4340691), mRNA	3-ketoacyl-CoA synthase 6(LOC4340691)	coding protein	psRNATarget

Reference

1	PMID:18353984 "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"; Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ; Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2	PMID:18312648 "Identification of novel and candidate miRNAs in rice by high throughput sequencing"; Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK; BMC Plant Biol. 8:25(2008).