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BaseInfo

ncRNA ID	novel_zma_miR3009
Species	Zea mays
Class	miRNA
Genome position	Chr6:46012499-46012601 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - UGGAUUGGAGUGAAUUGAGGUGGU - 24
Stem-loop(if miRNA)	--U  -         A         -GUAUA   U U       U UA U  GA    GG AUUGGAGUG AUUGAGGUG      AGG G AUUGAAG G  A AU  A    || ||||||||| |||||||||      ||| | ||||||| |  | ||    CC UAACUUCAC UAACUUCAC      UCC C UAACUUU C  U UA  C UUU  A         C         AUAAAA   - -       - CC U  AU
Stem-loop sequence	UGGAUUGGAGUGAAUUGAGGUGGUAUAAGGUGUAUUGAAGUGUAAUAUGAACUAAUUUCCCUUUCAAUCCCUAAAAUACACUUCAAUCCACUUCAAUACCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943240.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |||||||||||*|||||||||||| targets:573   ACCACCUCAAUCCACUCCAAUCCA   596 Target Full Sequence	1.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |||||||||||*|||||||||||| targets:1111   ACCACCUCAAUCCACUCCAAUCCA   1134 Target Full Sequence	1.5	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |||||||||||*|||||||||||| targets:2080   ACCACCUCAAUCCACUCCAAUCCA   2103 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |||||||||||*|||||||||||= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |||||||||||*|||||||||||= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |||||||||||*|||||||||||= targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
JB169085.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **||=||=|||||||||||||||* targets:78   UACAUCUUAAUUCACUCCAAUCCC   101 Target Full Sequence	2.0	Sequence 6749 from Patent EP2559767	NA	coding protein	psRNATarget
HI408624.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **||=||=|||||||||||||||* targets:78   UACAUCUUAAUUCACUCCAAUCCC   101 Target Full Sequence	2.0	Sequence 6749 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240754.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **||=||=|||||||||||||||* targets:78   UACAUCUUAAUUCACUCCAAUCCC   101 Target Full Sequence	2.0	Sequence 6749 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **=||||||||*|||||||||||| targets:2376   UGUACCUCAAUCCACUCCAAUCCA   2399 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **=||||||||*|||||||||||| targets:2398   UGUACCUCAAUCCACUCCAAUCCA   2421 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU952252.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |=||*=||||||||*||||||||| targets:10   AUCAGUUCAAUUCAAUCCAAUCCA   33 Target Full Sequence	2.5	Zea mays clone 1272816 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU967804.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   |=||*=||||||||*||||||||| targets:7   AUCAGUUCAAUUCAAUCCAAUCCA   30 Target Full Sequence	2.5	Zea mays clone 306235 chemocyanin precursor, mRNA, complete cds	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **||=||||||*|||||||||||* targets:351   UACAUCUCAAUCCACUCCAAUCCC   374 Target Full Sequence	2.5	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT067545.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **||=||||||*|||||||||||* targets:1767   UACAUCUCAAUCCACUCCAAUCCC   1790 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
BT034601.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **||=||||||*|||||||||||* targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:24   UGGUGGAGUUAAGUGAGGUUAGGU   1   **||=||||||*|||||||||||* targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget