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BaseInfo

ncRNA ID	novel_zma_miR3006
Species	Zea mays
Class	miRNA
Genome position	Chr6:50791257-50791359 [-]
Reference genome	RefGen_v4
Source	SRR2089714;SRR2089715;SRR2287159;SRR2089698
Length	24
Mature sequence(if miRNA)	1 - AGCAUCAGUUUCAACGGUCGUCUC - 24
Stem-loop(if miRNA)	--   U      ---      A     ----CUA      AUAAUAUU  GUGACUUUU   GAC GAUCGU   AGCUGA GUUUU       UACAUG        AG         C   ||| ||||||   |||||| |||||       ||||||        ||   CUG CUGGCA   UUGACU CGAAA       AUGUAU        AA         A CU   -      ACU      A     UUAUAUC      -------A  AGAAAAGUU
Stem-loop sequence	GACUGAUCGUAGCUGAAGUUUUCUAUACAUGAUAAUAUUAGGUGACUUUUCAUUGAAAAGAAAAUAUGUACUAUAUUAAAGCAUCAGUUUCAACGGUCGUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547954.1	ncRNA:24   CUCUGCUGGCAACUUUGACUACGA   1   |=||||||||||||||||||||=| targets:663   GGGACGACCGUUGAAACUGAUGUU   686 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547953.1	ncRNA:24   CUCUGCUGGCAACUUUGACUACGA   1   |=||||||||||||||||||||=| targets:663   GGGACGACCGUUGAAACUGAUGUU   686 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550353.1	ncRNA:24   CUCUGCUGGCAACUUUGACUACGA   1   *=||=||||||||||||||=|||| targets:904   AGGAUGACCGUUGAAACUGGUGCU   927 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor bHLH100-like (LOC103650720), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU940970.1	ncRNA:24   CUCUGCUGGCAACUUUGACUACGA   1   |=||=||||||||||||||*|||| targets:1764   GGGAUGACCGUUGAAACUGUUGCU   1787 Target Full Sequence	1.5	Zea mays clone 1224747 mRNA sequence	NA	coding protein	psRNATarget
XM_020552698.1	ncRNA:24   CUCUGCUGGCAACUUUGACUACGA   1   *|*||||||||||||||||=|||| targets:140   AAUACGACCGUUGAAACUGGUGCU   163 Target Full Sequence	1.5	PREDICTED: Zea mays signal peptide peptidase-like 4 (LOC103654100), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU949327.1	ncRNA:24   CUCUGCUGGCAACUUUGACUACGA   1   ***||||=|||||||||||||||| targets:213   AUAACGAUCGUUGAAACUGAUGCU   236 Target Full Sequence	1.0	Zea mays clone 401177 mRNA sequence	NA	coding protein	psRNATarget
EZ076153.1	ncRNA:20   GCUGGCAACUUUGACUACGA   1   |||||||||||||||||||| targets:1   CGACCGUUGAAACUGAUGCU   20 Target Full Sequence	0.0	TSA: Zea mays contig11790, mRNA sequence	NA	coding protein	psRNATarget