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BaseInfo

ncRNA ID	novel_zma_miR3005
Species	Zea mays
Class	miRNA
Genome position	Chr10:110665451-110665532 [+]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	1 - GGAUCACGAGAGGAUUGGAGGGGA - 24
Stem-loop(if miRNA)	--        A    A           C           UA   GGAUCACG GAGG UUGGAGGGGAU GAGGGGGAAAU  G   |||||||| |||| ||||||||||| |||||||||||   CCUAGUGC CUCC AAUCUCCCCUA CUCCCCCUUUA  U CC        C    C           A           CU
Stem-loop sequence	GGAUCACGAGAGGAUUGGAGGGGAUCGAGGGGGAAAUUAGUUCAUUUCCCCCUCAAUCCCCUCUAACCCUCCCGUGAUCCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403493.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||||||||||||||*|||||||| targets:42   UCCCCUCCAAUCCUCCCGUGAUCC   65 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||||||||||||||*|||||||| targets:42   UCCCCUCCAAUCCUCCCGUGAUCC   65 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||||||||||||||*|||||||| targets:42   UCCCCUCCAAUCCUCCCGUGAUCC   65 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   ||||||||||||||||||*||||| targets:87   UCCCCUCCAAUCCUCUCGGGAUCC   110 Target Full Sequence	1.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
HI406392.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||=||||=||||||*|||||||| targets:60   UCCUCUCCGAUCCUCCCGUGAUCC   83 Target Full Sequence	2.5	Sequence 4517 from Patent EP2074227	NA	coding protein	psRNATarget
JB166853.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||=||||=||||||*|||||||| targets:60   UCCUCUCCGAUCCUCCCGUGAUCC   83 Target Full Sequence	2.5	Sequence 4517 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238522.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||=||||=||||||*|||||||| targets:60   UCCUCUCCGAUCCUCCCGUGAUCC   83 Target Full Sequence	2.5	Sequence 4517 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||=||||=||||||*|||||||| targets:559   UCCUCUCCGAUCCUCCCGUGAUCC   582 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||=||||=||||||*|||||||| targets:587   UCCUCUCCGAUCCUCCCGUGAUCC   610 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:24   AGGGGAGGUUAGGAGAGCACUAGG   1   |||=||||=||||||*|||||||| targets:589   UCCUCUCCGAUCCUCCCGUGAUCC   612 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget