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BaseInfo

ncRNA ID	novel_zma_miR3004
Species	Zea mays
Class	miRNA
Genome position	Chr6:67858205-67858260 [-]
Reference genome	RefGen_v4
Source	SRR1583944
Length	24
Mature sequence(if miRNA)	33 - ACACUCGGCAAAGAACCUAAACCG - 56
Stem-loop(if miRNA)	--              A C  A   GGU   ACACUCGGCAAAGA C UA ACC   G   |||||||||||||| | || |||   UGUGAGCCGUUUCU G GU UGG   C AU              C U  C   ACC
Stem-loop sequence	ACACUCGGCAAAGAACCUAAACCGGUGCCCAGGUCUGUGCUCUUUGCCGAGUGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238815.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	0.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	0.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||| targets:37   CGGUAUAGGUUCUUUGCCGAGUGU   60 Target Full Sequence	0.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	0.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	0.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*||||||||||||||||||| targets:174   CGGUAUAGGUUCUUUGCCGAGUGU   197 Target Full Sequence	0.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:21   AAAUCCAAGAAACGGCUCACA   1   *|||||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	0.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:21   AAAUCCAAGAAACGGCUCACA   1   *|||||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	0.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:21   AAAUCCAAGAAACGGCUCACA   1   *|||||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGU   21 Target Full Sequence	0.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   *|||*|*||||||||||||||||* targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	2.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   *|||*|*||||||||||||||||* targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	2.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   *|||*|*||||||||||||||||* targets:46   AGGUCUUGGUUCUUUGCCGAGUGC   69 Target Full Sequence	2.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
EZ087925.1	ncRNA:24   GC-CA-AAUCCAAGAAACGGCUCACA   1   ||-||-||=|*||||||||||||||* targets:43   CGAGUGUUGGCUUCUUUGCCGAGUGC   68 Target Full Sequence	3.0	TSA: Zea mays contig23571, mRNA sequence	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   GC-CA-AAUCCAAGAAACGGCUCACA   1   ||-||-||=|*||||||||||||||* targets:1142   CGAGUGUUGGCUUCUUUGCCGAGUGC   1167 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   GC-CA-AAUCCAAGAAACGGCUCACA   1   ||-||-||=|*||||||||||||||* targets:1279   CGAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   GC-CA-AAUCCAAGAAACGGCUCACA   1   ||-||-||=|*||||||||||||||* targets:1279   CGAGUGUUGGCUUCUUUGCCGAGUGC   1304 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
HI406144.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*|||**|||||||||||||* targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238274.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*|||**|||||||||||||* targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2985353	NA	coding protein	psRNATarget
JB166605.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   ||||*|||**|||||||||||||* targets:48   CGGUAUAGCCUCUUUGCCGAGUGC   71 Target Full Sequence	3.0	Sequence 4269 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   GCCA-------AAUCCAAGAAACGGCUCACA   1   *|||-------|*|||||||||||||||||* targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	2.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   GCCA-------AAUCCAAGAAACGGCUCACA   1   *|||-------|*|||||||||||||||||* targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	2.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   GCCA-------AAUCCAAGAAACGGCUCACA   1   *|||-------|*|||||||||||||||||* targets:66   GGGUCCUCAUGUGAGGUUCUUUGCCGAGUGC   96 Target Full Sequence	2.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   GCCAAAUCCAAGAAACGGCUCACA   1   *|****=||||||||||||||||| targets:584   GGCAAAGGGUUCUUUGCCGAGUGU   607 Target Full Sequence	2.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   GCCAAAUC-CAAGAAACGGCUCACA   1   |||**|*|-|||||||||||||||| targets:498   CGGAAUCGCGUUCUUUGCCGAGUGU   522 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
BT035133.1	ncRNA:24   GCCA-AAUCCAAGAAACGGCUCACA   1   |||*-||*||*|||||||||||||| targets:1289   CGGAAUUCGGCUCUUUGCCGAGUGU   1313 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0041G19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138164.1	ncRNA:24   GCCA-AAUCCAAGAAACGGCUCACA   1   |||*-||*||*|||||||||||||| targets:1289   CGGAAUUCGGCUCUUUGCCGAGUGU   1313 Target Full Sequence	2.0	Zea mays OSIGBa0147B06.5 protein (LOC100192993), mRNA	NA	coding protein	psRNATarget
XM_008668897.2	ncRNA:24   GCCA-AAUCCAAGAAACGGCUCACA   1   |||*-||*||*|||||||||||||| targets:1237   CGGAAUUCGGCUCUUUGCCGAGUGU   1261 Target Full Sequence	2.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547384.1	ncRNA:24   GCCA-AAUCCAAGAAACGGCUCACA   1   |||*-||*||*|||||||||||||| targets:1250   CGGAAUUCGGCUCUUUGCCGAGUGU   1274 Target Full Sequence	2.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   GCCAAAUC-CAAGAAACGGCUCACA   1   |||**|*|-|||||||||||||||| targets:798   CGGAAUCGUGUUCUUUGCCGAGUGU   822 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   GCCAAAUC-CAAGAAACGGCUCACA   1   |||**|*|-|||||||||||||||| targets:798   CGGAAUCGUGUUCUUUGCCGAGUGU   822 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget