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BaseInfo

ncRNA ID	novel_zma_miR3003
Species	Zea mays
Class	miRNA
Genome position	Chr6:108958991-108959141 [-]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	23
Mature sequence(if miRNA)	1 - UGCUUUUCUAAUUUAUAUAGACU - 23
Stem-loop(if miRNA)	--                                               C       ACAA                 UUUAUAUAAAUUAGAGAAGCAAUCCGGUUAGGAAUCGUUCCGACCCA CAAUCCG    AAACGAACAAGGCCU   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||||A   AGAUAUAUUUAAUCUUUUCGUUAGGCCGAUCCUUAGCAAGGCUGGGU GUUAGGC    UUUGCUUGUUCCGGA UC                                               A       CAUA
Stem-loop sequence	UUUAUAUAAAUUAGAGAAGCAAUCCGGUUAGGAAUCGUUCCGACCCACCAAUCCGACAAAAACGAACAAGGCCUAAGGCCUUGUUCGUUUAUACCGGAUUGAUGGGUCGGAACGAUUCCUAGCCGGAUUGCUUUUCUAAUUUAUAUAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676565.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||||||||||||||||=||||| targets:1138   AGUCUAUAUAAAUUAGAGAAGCA   1160 Target Full Sequence	1.5	PREDICTED: Zea mays NDR1/HIN1-like protein 10 (LOC103650970), mRNA	NA	coding protein	psRNATarget
XM_020539318.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:2637   AGUUUAUAUAAAUUAGAGAAGCA   2659 Target Full Sequence	1.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650716.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:2634   AGUUUAUAUAAAUUAGAGAAGCA   2656 Target Full Sequence	1.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001175834.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:904   AGUUUAUAUAAAUUAGAGAAGCA   926 Target Full Sequence	1.5	Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA	NA	coding protein	psRNATarget
BT066445.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:904   AGUUUAUAUAAAUUAGAGAAGCA   926 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538654.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:815   AGUUUAUAUAAAUUAGAGAAGCA   837 Target Full Sequence	1.5	PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068430.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:505   AGUUUAUAUAAAUUAGAGAAGCA   527 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666870.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1645   AGUUUAUAUAAAUUAGAGAAGCA   1667 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor eIF-2B subunit delta (LOC100217034), mRNA	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1707   AGUUUAUAUAAAUUAGAGAAGCA   1729 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
BT063644.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1707   AGUUUAUAUAAAUUAGAGAAGCA   1729 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650936.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1743   AGUUUAUAUAAAUUAGAGAAGCA   1765 Target Full Sequence	1.5	PREDICTED: Zea mays berberine bridge enzyme-like 27 (LOC103629842), mRNA	NA	coding protein	psRNATarget
BT066464.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1218   AGUUUAUAUAAAUUAGAGAAGCA   1240 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0001K21 mRNA, complete cds	NA	coding protein	psRNATarget
EU972216.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1314   AGUUUAUAUAAAUUAGAGAAGCA   1336 Target Full Sequence	1.5	Zea mays clone 377576 mRNA sequence	NA	coding protein	psRNATarget
NM_001138328.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1296   AGUUUAUAUAAAUUAGAGAAGCA   1318 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA	NA	coding protein	psRNATarget
BT035367.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1296   AGUUUAUAUAAAUUAGAGAAGCA   1318 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670105.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1065   AGUUUAUAUAAAUUAGAGAAGCA   1087 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382252 (LOC100382252), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001153908.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1138   AGUUUAUAUAAAUUAGAGAAGCA   1160 Target Full Sequence	1.5	Zea mays plant-specific domain TIGR01627 family protein (LOC100280988), mRNA	NA	coding protein	psRNATarget
EU955083.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:1138   AGUUUAUAUAAAUUAGAGAAGCA   1160 Target Full Sequence	1.5	Zea mays clone 1508988 plant-specific domain TIGR01627 family protein mRNA, complete cds	NA	coding protein	psRNATarget
EU973171.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:706   AGUUUAUAUAAAUUAGAGAAGCA   728 Target Full Sequence	1.5	Zea mays clone 394490 mRNA sequence	NA	coding protein	psRNATarget
EU971977.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:775   AGUUUAUAUAAAUUAGAGAAGCA   797 Target Full Sequence	1.5	Zea mays clone 373036 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY103808.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:606   AGUUUAUAUAAAUUAGAGAAGCA   628 Target Full Sequence	1.5	Zea mays PCO103670 mRNA sequence	NA	coding protein	psRNATarget
EU975407.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:521   AGUUUAUAUAAAUUAGAGAAGCA   543 Target Full Sequence	1.5	Zea mays clone 489701 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ060491.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:176   AGUUUAUAUAAAUUAGAGAAGCA   198 Target Full Sequence	1.5	TSA: Zea mays contig61613, mRNA sequence	NA	coding protein	psRNATarget
EZ063705.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:299   AGUUUAUAUAAAUUAGAGAAGCA   321 Target Full Sequence	1.5	TSA: Zea mays contig64827, mRNA sequence	NA	coding protein	psRNATarget
EZ050562.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:99   AGUUUAUAUAAAUUAGAGAAGCA   121 Target Full Sequence	1.5	TSA: Zea mays contig51682, mRNA sequence	NA	coding protein	psRNATarget
LQ238065.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:58   AGUUUAUAUAAAUUAGAGAAGCA   80 Target Full Sequence	1.5	Sequence 4060 from Patent EP2985353	NA	coding protein	psRNATarget
HI405935.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:58   AGUUUAUAUAAAUUAGAGAAGCA   80 Target Full Sequence	1.5	Sequence 4060 from Patent EP2074227	NA	coding protein	psRNATarget
JB166396.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:58   AGUUUAUAUAAAUUAGAGAAGCA   80 Target Full Sequence	1.5	Sequence 4060 from Patent EP2559767	NA	coding protein	psRNATarget
HI405926.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:53   AGUUUAUAUAAAUUAGAGAAGCA   75 Target Full Sequence	1.5	Sequence 4051 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238034.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:53   AGUUUAUAUAAAUUAGAGAAGCA   75 Target Full Sequence	1.5	Sequence 4029 from Patent EP2985353	NA	coding protein	psRNATarget
JB166365.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:53   AGUUUAUAUAAAUUAGAGAAGCA   75 Target Full Sequence	1.5	Sequence 4029 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238056.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:53   AGUUUAUAUAAAUUAGAGAAGCA   75 Target Full Sequence	1.5	Sequence 4051 from Patent EP2985353	NA	coding protein	psRNATarget
JB166387.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:53   AGUUUAUAUAAAUUAGAGAAGCA   75 Target Full Sequence	1.5	Sequence 4051 from Patent EP2559767	NA	coding protein	psRNATarget
HI405904.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|||||||||||||=||||| targets:53   AGUUUAUAUAAAUUAGAGAAGCA   75 Target Full Sequence	1.5	Sequence 4029 from Patent EP2074227	NA	coding protein	psRNATarget
JB166398.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|=|||||||||||=||||| targets:54   AGUUUGUAUAAAUUAGAGAAGCA   76 Target Full Sequence	2.5	Sequence 4062 from Patent EP2559767	NA	coding protein	psRNATarget
HI405937.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|=|||||||||||=||||| targets:54   AGUUUGUAUAAAUUAGAGAAGCA   76 Target Full Sequence	2.5	Sequence 4062 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238067.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |||=|=|||||||||||=||||| targets:54   AGUUUGUAUAAAUUAGAGAAGCA   76 Target Full Sequence	2.5	Sequence 4062 from Patent EP2985353	NA	coding protein	psRNATarget
EZ516643.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |*|||||||||||||||=||||| targets:187   AAUCUAUAUAAAUUAGAGAAGCA   209 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL45Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |*|=|||||||||||||=||||| targets:6486   AAUUUAUAUAAAUUAGAGAAGCA   6508 Target Full Sequence	1.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654032.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |*|=|||||||||||||=||||| targets:971   AAUUUAUAUAAAUUAGAGAAGCA   993 Target Full Sequence	1.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X5, mRNA	NA	coding protein	psRNATarget
JB166425.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |*|=|||||||||||||=||||| targets:61   AAUUUAUAUAAAUUAGAGAAGCA   83 Target Full Sequence	1.5	Sequence 4089 from Patent EP2559767	NA	coding protein	psRNATarget
HI405964.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |*|=|||||||||||||=||||| targets:61   AAUUUAUAUAAAUUAGAGAAGCA   83 Target Full Sequence	1.5	Sequence 4089 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238094.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |*|=|||||||||||||=||||| targets:61   AAUUUAUAUAAAUUAGAGAAGCA   83 Target Full Sequence	1.5	Sequence 4089 from Patent EP2985353	NA	coding protein	psRNATarget
EU940997.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |**=|||||||||||||=||||| targets:503   AACUUAUAUAAAUUAGAGAAGCA   525 Target Full Sequence	1.5	Zea mays clone 1272217 mRNA sequence	NA	coding protein	psRNATarget
XM_008651541.2	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   ||*=||||*||||||||*||||| targets:2981   AGCUUAUACAAAUUAGAUAAGCA   3003 Target Full Sequence	2.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase IRK (LOC103630489), mRNA	NA	coding protein	psRNATarget
AY109256.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   ||*=||||*||||||||*||||| targets:354   AGCUUAUACAAAUUAGAUAAGCA   376 Target Full Sequence	2.5	Zea mays PCO124672 mRNA sequence	NA	coding protein	psRNATarget
EU950684.1	ncRNA:23   UCAGAUAUAUUUAAUCUUUUCGU   1   |**=||||*||||||||=||||| targets:567   AACUUAUACAAAUUAGAGAAGCA   589 Target Full Sequence	2.5	Zea mays clone 509119 mRNA sequence	NA	coding protein	psRNATarget