Search result

BaseInfo

ncRNA ID	novel_zma_miR2998
Species	Zea mays
Class	miRNA
Genome position	Chr6:118436515-118436602 [-]
Reference genome	RefGen_v4
Source	SRR2089714
Length	24
Mature sequence(if miRNA)	65 - GAUGUUGAUCCAAGGGGACGUGCG - 88
Stem-loop(if miRNA)	--         C      G    --  GGAUGAGUGGGAGGGGGA   GAUGUUGAU CAAGGG ACGU  GC                  U   ||||||||| |||||| ||||  ||                  U   CUACAACUA GUUCCU UGCG  CC                  U UA         U      -    UU  CGUAUCUAUUAAAAAAAG
Stem-loop sequence	GAUGUUGAUCCAAGGGGACGUGCGGAUGAGUGGGAGGGGGAUUUGAAAAAAAUUAUCUAUGCCCUUGCGUUCCUUGUAUCAACAUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676928.2	ncRNA:24   GCGUGCAGGGGAACCUAGUUGUAG   1   |||||||||||||||||||||||| targets:2930   CGCACGUCCCCUUGGAUCAACAUC   2953 Target Full Sequence	0.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g09650, chloroplastic (LOC103651307), mRNA	NA	coding protein	psRNATarget
LQ235050.1	ncRNA:24   GCGUGCAGGGGAACCUAGUUGUAG   1   |||||**||||||||||||||||| targets:117   CGCACACCCCCUUGGAUCAACAUC   140 Target Full Sequence	2.0	Sequence 1045 from Patent EP2985353	NA	coding protein	psRNATarget
JB163381.1	ncRNA:24   GCGUGCAGGGGAACCUAGUUGUAG   1   |||||**||||||||||||||||| targets:117   CGCACACCCCCUUGGAUCAACAUC   140 Target Full Sequence	2.0	Sequence 1045 from Patent EP2559767	NA	coding protein	psRNATarget
HI402920.1	ncRNA:24   GCGUGCAGGGGAACCUAGUUGUAG   1   |||||**||||||||||||||||| targets:117   CGCACACCCCCUUGGAUCAACAUC   140 Target Full Sequence	2.0	Sequence 1045 from Patent EP2074227	NA	coding protein	psRNATarget